Package: LGRF 1.0
Zihuai He
LGRF: Set-Based Tests for Genetic Association in Longitudinal Studies
Functions for the longitudinal genetic random field method (He et al., 2015, <doi:10.1111/biom.12310>) to test the association between a longitudinally measured quantitative outcome and a set of genetic variants in a gene/region.
Authors:
LGRF_1.0.tar.gz
LGRF_1.0.tar.gz(r-4.5-noble)LGRF_1.0.tar.gz(r-4.4-noble)
LGRF_1.0.tgz(r-4.4-emscripten)LGRF_1.0.tgz(r-4.3-emscripten)
LGRF.pdf |LGRF.html✨
LGRF/json (API)
| # Install 'LGRF' in R: |
| install.packages('LGRF', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- LGRF.example - Data example for LGRF
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 9 years agofrom:242eee9841. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 27 2024 |
| R-4.5-linux | OK | Nov 27 2024 |
Exports:IBS_pseudoLGRF.SSD.AllLGRF.SSD.OneSet_SetIndexnull.LGRFtest.LGRFtest.MinP
Dependencies:backportsbroomcliCompQuadFormcpp11dplyrfansigeepackgenericsgluelatticelifecyclemagrittrMASSMatrixpillarpkgconfigpurrrR6RcppRcppEigenrlangRSpectraSKATSPAteststringistringrtibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Generate IBS pseudo variables | IBS_pseudo |
| Data example for LGRF | LGRF.example |
| LGRF tests for multiple regions/genes using SSD format files | LGRF.SSD.All |
| LGRF tests for a single region/gene using SSD format files | LGRF.SSD.OneSet_SetIndex |
| Fit the null model for longitudinal genetic random field model | null.LGRF |
| Test the association between an outcome variable and a region/gene by LGRF | test.LGRF |
| Test the association between an outcome variable and a region/gene by MinP | test.MinP |