Package: LDAandLDAS 1.1.3
Yaoling Yang
LDAandLDAS: Linkage Disequilibrium of Ancestry (LDA) and LDA Score (LDAS)
Computation of linkage disequilibrium of ancestry (LDA) and linkage disequilibrium of ancestry score (LDAS). LDA calculates the pairwise linkage disequilibrium of ancestry between single nucleotide polymorphisms (SNPs). LDAS calculates the LDA score of SNPs. The methods are described in Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.
Authors:
LDAandLDAS_1.1.3.tar.gz
LDAandLDAS_1.1.3.tar.gz(r-4.5-noble)LDAandLDAS_1.1.3.tar.gz(r-4.4-noble)
LDAandLDAS_1.1.3.tgz(r-4.4-emscripten)LDAandLDAS_1.1.3.tgz(r-4.3-emscripten)
LDAandLDAS.pdf |LDAandLDAS.html✨
LDAandLDAS/json (API)
| # Install 'LDAandLDAS' in R: |
| install.packages('LDAandLDAS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- example_map - Example genetic maps
- example_painting_p1 - Example painting data for population 1.
- example_painting_p2 - Example painting data for population 2.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 10 months agofrom:a43b4b5559. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 06 2024 |
| R-4.5-linux-x86_64 | OK | Dec 06 2024 |
Dependencies:Rcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Linkage Disequilibrium of Ancestry (LDA) and LDA Score (LDAS) | LDAandLDAS-package LDAandLDAS |
| LDA of a pair of SNPs | cal_lda |
| Example genetic maps | example_map |
| Example painting data for population 1. | example_painting_p1 |
| Example painting data for population 2. | example_painting_p2 |
| LDA of all pairs of SNPs | LDA |
| LDA Score | LDAS |