Package: LCAextend 1.3
Alexandre BUREAU
LCAextend: Latent Class Analysis (LCA) with Familial Dependence in Extended Pedigrees
Latent Class Analysis of phenotypic measurements in pedigrees and model selection based on one of two methods: likelihood-based cross-validation and Bayesian Information Criterion. Computation of individual and triplet child-parents weights in a pedigree is performed using an upward-downward algorithm. The model takes into account the familial dependence defined by the pedigree structure by considering that a class of a child depends on his parents classes via triplet-transition probabilities of the classes. The package handles the case where measurements are available on all subjects and the case where measurements are available only on symptomatic (i.e. affected) subjects. Distributions for discrete (or ordinal) and continuous data are currently implemented. The package can deal with missing data.
Authors:
LCAextend_1.3.tar.gz
LCAextend_1.3.tar.gz(r-4.5-noble)LCAextend_1.3.tar.gz(r-4.4-noble)
LCAextend_1.3.tgz(r-4.4-emscripten)LCAextend_1.3.tgz(r-4.3-emscripten)
LCAextend.pdf |LCAextend.html✨
LCAextend/json (API)
# Install 'LCAextend' in R: |
install.packages('LCAextend', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- param.cont - Parameters to be used for examples in the case of continuous measurements
- param.ordi - Parameters to be used for examples in the case of discrete or ordinal measurements
- ped.cont - Pedigrees with continuous data to be used for examples
- ped.ordi - Pedigrees with discrete or ordinal data to be used for examples
- peel - Peeling order of pedigrees and couples in pedigrees
- probs - Probabilities parameters to be used for examples
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:d31227453a. Checks:OK: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 22 2024 |
R-4.5-linux | OK | Nov 22 2024 |
Exports:alpha.computeattrib.densdens.normdens.prod.ordidownwarddownward.connecte.stepinit.norminit.ordiinit.p.translca.modelmodel.selectn.paramoptim.const.ordioptim.diff.normoptim.equal.normoptim.gene.normoptim.indep.normoptim.noconst.ordioptim.probsp.computep.post.childp.post.foundupwardupward.connectweight.famdepweight.nuc
Dependencies:backportsbase64encbootbslibcachemcheckmatecliclustercodetoolscolorspacedata.tabledigestevaluatefansifarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonlitekinship2knitrlabelinglatticelifecyclemagrittrMASSMatrixMatrixModelsmemoisemgcvmimemultcompmunsellmvtnormnlmennetpillarpkgconfigpolsplinequadprogquantregR6rappdirsRColorBrewerrlangrmarkdownrmsrpartrstudioapisandwichsassscalesSparseMstringistringrsurvivalTH.datatibbletinytexutf8vctrsviridisviridisLitewithrxfunyamlzoo