Package: JSparO 1.5.0

Xinlin Hu

JSparO: Joint Sparse Optimization via Proximal Gradient Method for Cell Fate Conversion

Implementation of joint sparse optimization (JSparO) to infer the gene regulatory network for cell fate conversion. The proximal gradient method is implemented to solve different low-order regularization models for JSparO.

Authors:Xinlin Hu [aut, cre], Yaohua Hu [cph, aut]

JSparO_1.5.0.tar.gz
JSparO_1.5.0.tar.gz(r-4.5-noble)JSparO_1.5.0.tar.gz(r-4.4-noble)
JSparO_1.5.0.tgz(r-4.4-emscripten)JSparO_1.5.0.tgz(r-4.3-emscripten)
JSparO.pdf |JSparO.html✨
JSparO/json (API)

# Install 'JSparO' in R:
install.packages('JSparO', repos = 'https://cloud.r-project.org')

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 stars 170 downloads 10 exports 1 dependencies

Last updated 3 years agofrom:9fff7bd325. Checks:3 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 31 2025
R-4.5-linuxOKMar 31 2025
R-4.4-linuxOKMar 31 2025

Exports:demo_JSparOL1HalfThrL1HardThrL1SoftThrL1twothirdsThrL2HalfThrL2HardThrL2NewtonThrL2SoftThrL2twothirdsThr

Dependencies:pracma

Citation

To cite package ‘JSparO’ in publications use:

Hu X, Hu Y (2022). JSparO: Joint Sparse Optimization via Proximal Gradient Method for Cell Fate Conversion. R package version 1.5.0, https://CRAN.R-project.org/package=JSparO.

Corresponding BibTeX entry: 

  @Manual{,
    title = {JSparO: Joint Sparse Optimization via Proximal Gradient
      Method for Cell Fate Conversion},
    author = {Xinlin Hu and Yaohua Hu},
    year = {2022},
    note = {R package version 1.5.0},
    url = {https://CRAN.R-project.org/package=JSparO},
  }