Package: JM4QTN 1.0.0

Junhui Li

JM4QTN: Joint Mapping for Quantitative Trait Loci

A comprehensive computational framework for joint mapping, developed by Li (2016) <doi:10.11841/j.issn.1007-4333.2016.06.002>, supports quantitative trait locus detection in structured genetic populations. It integrates robust phenotype summarization, computes genotype probabilities, and imputes missing markers for association and linkage mapping. Empirical significance thresholds are estimated via permutation testing coupled with stepwise regression. The framework enables genome-wide scans under both univariate and multivariate trait models, streamlining the discovery of complex genetic architectures.

Authors:Junhui Li [aut, cre], Wenxin Liu [aut]

JM4QTN_1.0.0.tar.gz
JM4QTN_1.0.0.tar.gz(r-4.7-any)JM4QTN_1.0.0.tar.gz(r-4.6-any)
JM4QTN_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
JM4QTN/json (API)

# Install 'JM4QTN' in R:
install.packages('JM4QTN', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • GeneticMap - Data about genetic map
  • GenoData - Data about molecular markers genotype
  • GenoData_EST - Data about information of molecular markers chromosome id, genetic distance position and genotype with estimated missing markers
  • GenoData_S2 - Data about information of molecular markers chromosome id, genetic distance position and estimated missing markers genotype with steps = 2
  • PhenoData - Data about all phenotype

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.70 score 9 exports 104 dependencies

Last updated from:b738fe8fb5. Checks:4 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK176
source / vignettesOK247
linux-release-x86_64OK168
wasm-releaseOK168

Exports:expected_genotype_distgenotype_freqgenotype_probhaldane_mapjoint_mappermutation_testpheno_statsskeletion_buildskeleton_build

Dependencies:askpassbackportsbase64encbslibcachemcheckmatecliclustercodetoolscolorspacecpp11data.tabledigestdplyremmeansestimabilityevaluatefarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverforeignFormulafsgdtoolsgenericsggplot2ggrepelgluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclelsmeansmagrittrMASSMatrixMatrixModelsmemoisemimemultcompmvtnormnlmennetnumDerivofficeropensslpillarpkgconfigpolsplinepROCpurrrquantregR6raggrappdirsRColorBrewerRcpprlangrmarkdownrmsrpartrstudioapiS7sandwichsassscalesSparseMStepRegstringistringrsurvAUCsurvivalsyssystemfontstextshapingTH.datatibbletidyrtidyselecttinytexutf8uuidvctrsviridisLitewithrxfunxml2yamlzipzoo