Package: IntegratedJM 1.6
Rudradev Sengupta
IntegratedJM: Joint Modeling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature
Offers modeling the association between gene-expression and bioassay data, taking care of the effect due to a fingerprint feature and helps with several plots to better understand the analysis.
Authors:
IntegratedJM_1.6.tar.gz
IntegratedJM_1.6.tar.gz(r-4.5-noble)IntegratedJM_1.6.tar.gz(r-4.4-noble)
IntegratedJM_1.6.tgz(r-4.4-emscripten)IntegratedJM_1.6.tgz(r-4.3-emscripten)
IntegratedJM.pdf |IntegratedJM.html✨
IntegratedJM/json (API)
NEWS
| # Install 'IntegratedJM' in R: |
| install.packages('IntegratedJM', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- sample_data - Sample Data Example
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:ec82f6ce91. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 28 2024 |
| R-4.5-linux | OK | Nov 28 2024 |
Exports:fitJMgetCorrUnadmultiplotnon_nullcovnullcovplot1geneplotAssoplotEfftopkGenesvolcano
Dependencies:BiobaseBiocGenericsclicolorspacefansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| fitJM | fitJM |
| getCorrUnad | getCorrUnad |
| Joint Modelling of Gene Expression and Bio-activity data, taking care of the effect due to Fingerprint Feature. | IntegratedJM-package IntegratedJM |
| multiplot | multiplot |
| non_nullcov | non_nullcov |
| nullcov | nullcov |
| plot1gene | plot1gene |
| plotAsso | plotAsso |
| plotEff | plotEff |
| Sample Data Example | sample_data |
| topkGenes | topkGenes |
| volcano | volcano |