Package: IntNMF 1.3.0

Prabhakar Chalise
IntNMF: Integrative Clustering of Multiple Genomic Dataset
Carries out integrative clustering analysis using multiple types of genomic dataset using integrative Non-negative Matrix factorization.
Authors:
IntNMF_1.3.0.tar.gz
IntNMF_1.3.0.zip(r-4.7-any)IntNMF_1.3.0.zip(r-4.6-any)
IntNMF_1.3.0.tar.gz(r-4.7-any)IntNMF_1.3.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
IntNMF/json (API)
| # Install 'IntNMF' in R: |
| install.packages('IntNMF', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:c95af29a27. Checks:5 OK, 1 FAIL. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 148 | ||
| source / vignettes | OK | 322 | ||
| linux-release | OK | 153 | ||
| windows-devel | OK | 105 | ||
| windows-release | OK | 104 | ||
| wasm-release | FAIL | 124 |
Exports:ClusterEntropyClusterPurityConsensusMatPlotnmf.mnnalsnmf.opt.kSilhouettePlot
Dependencies:BiobaseBiocGenericsBiocManagercliclustercodetoolscolorspacecpp11digestdoParallelfarverforeachgenericsggplot2gluegridBasegtableInterSIMisobanditeratorslabelinglifecyclemagrittrMASSmclustNMFplyrR6RColorBrewerRcppregistryreshape2rlangrngtoolsS7scalesstringistringrvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A function to measure cluster entropy | ClusterEntropy |
| A function to measure cluster purity | ClusterPurity |
| A function to create image plot of the consensus matrix | ConsensusMatPlot |
| Nonnegative Matrix Factorization of Multiple data using Nonnegative Alternating Least Square | nmf.mnnals |
| Selection of optimum number of clusters (k) | nmf.opt.k |
| A function to plot silhouette width | SilhouettePlot |