Package: IntNMF 1.3.0
Prabhakar Chalise
IntNMF: Integrative Clustering of Multiple Genomic Dataset
Carries out integrative clustering analysis using multiple types of genomic dataset using integrative Non-negative Matrix factorization.
Authors:
IntNMF_1.3.0.tar.gz
IntNMF_1.3.0.tar.gz(r-4.5-noble)IntNMF_1.3.0.tar.gz(r-4.4-noble)
IntNMF.pdf |IntNMF.html✨
IntNMF/json (API)
| # Install 'IntNMF' in R: |
| install.packages('IntNMF', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 1 months agofrom:c95af29a27. Checks:2 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 18 2025 |
| R-4.5-linux | OK | Feb 18 2025 |
Exports:ClusterEntropyClusterPurityConsensusMatPlotnmf.mnnalsnmf.opt.kSilhouettePlot
Dependencies:BiobaseBiocGenericsBiocManagercliclustercodetoolscolorspacedigestdoParallelfansifarverforeachgenericsggplot2gluegridBasegtableInterSIMisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmclustmgcvmunsellnlmeNMFpillarpkgconfigplyrR6RColorBrewerRcppregistryreshape2rlangrngtoolsscalesstringistringrtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A function to measure cluster entropy | ClusterEntropy |
| A function to measure cluster purity | ClusterPurity |
| A function to create image plot of the consensus matrix | ConsensusMatPlot |
| Nonnegative Matrix Factorization of Multiple data using Nonnegative Alternating Least Square | nmf.mnnals |
| Selection of optimum number of clusters (k) | nmf.opt.k |
| A function to plot silhouette width | SilhouettePlot |