Package: IncidencePrevalence 0.9.0

Edward Burn

IncidencePrevalence: Estimate Incidence and Prevalence using the OMOP Common Data Model

Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.

Authors:Edward Burn [aut, cre], Berta Raventos [aut], Marti Catala [aut], Mike Du [ctb], Yuchen Guo [ctb], Adam Black [ctb], Ger Inberg [ctb], Kim Lopez [ctb]

IncidencePrevalence_0.9.0.tar.gz
IncidencePrevalence_0.9.0.tar.gz(r-4.5-noble)IncidencePrevalence_0.9.0.tar.gz(r-4.4-noble)
IncidencePrevalence_0.9.0.tgz(r-4.4-emscripten)IncidencePrevalence_0.9.0.tgz(r-4.3-emscripten)
IncidencePrevalence.pdf |IncidencePrevalence.html✨
IncidencePrevalence/json (API)

# Install 'IncidencePrevalence' in R:
install.packages('IncidencePrevalence', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/darwin-eu/incidenceprevalence/issues

Pkgdown site:https://darwin-eu.github.io

5.48 score 1 stars 86 scripts 1.2k downloads 26 exports 46 dependencies

Last updated 29 days agofrom:6ba80c8d55. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 28 2024
R-4.5-linuxOKNov 28 2024

Exports:%>%attritionbenchmarkIncidencePrevalencebindcohortCodelistcohortCountestimateIncidenceestimatePeriodPrevalenceestimatePointPrevalenceexportSummarisedResultgenerateDenominatorCohortSetgenerateTargetDenominatorCohortSetimportSummarisedResultmockIncidencePrevalencemockIncidencePrevalenceRefoptionsPlotoptionsTableIncidenceoptionsTablePrevalenceplotIncidenceplotPrevalencesettingssuppresstableIncidencetableIncidenceAttritiontablePrevalencetablePrevalenceAttrition

Dependencies:backportsbitbit64blobCDMConnectorcheckmateclicliprclockcpp11crayonDBIdbplyrdiffobjdplyrfansifsgenericsgluehmsjsonlitelifecyclemagrittromopgenericsPatientProfilespillarpkgconfigprettyunitsprogresspurrrR6readrrlangsnakecasestringistringrtibbletidyrtidyselecttzdbutf8vctrsvisOmopResultsvroomwaldowithr

Introduction to IncidencePrevalence

Rendered froma01_Introduction_to_IncidencePrevalence.Rmdusingknitr::rmarkdownon Nov 28 2024.

Last update: 2024-11-27
Started: 2023-03-27

Creating denominator cohorts

Rendered froma02_Creating_denominator_populations.Rmdusingknitr::rmarkdownon Nov 28 2024.

Last update: 2024-11-27
Started: 2023-03-27

Creating target denominator populations

Rendered froma03_Creating_target_denominator_populations.Rmdusingknitr::rmarkdownon Nov 28 2024.

Last update: 2024-11-27
Started: 2023-12-12

Calculating prevalence

Rendered froma04_Calculating_prevalence.Rmdusingknitr::rmarkdownon Nov 28 2024.

Last update: 2024-11-27
Started: 2023-03-27

Calculating incidence

Rendered froma05_Calculating_incidence.Rmdusingknitr::rmarkdownon Nov 28 2024.

Last update: 2024-11-27
Started: 2023-03-27

Plotting options

Rendered froma06_Plotting_options.Rmdusingknitr::rmarkdownon Nov 28 2024.

Last update: 2024-11-27
Started: 2024-03-22