Package: IncidencePrevalence 0.7.4

Edward Burn

IncidencePrevalence:Estimate Incidence and Prevalence using the OMOP Common Data Model

Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.

Authors:Edward Burn [aut, cre], Berta Raventos [aut], Marti Catala [aut], Mike Du [ctb], Yuchen Guo [ctb], Adam Black [ctb], Ger Inberg [ctb], Kim Lopez [ctb]

IncidencePrevalence_0.7.4.tar.gz
IncidencePrevalence_0.7.4.tar.gz(r-4.5-noble)IncidencePrevalence_0.7.4.tar.gz(r-4.4-noble)
IncidencePrevalence_0.7.4.tgz(r-4.4-emscripten)IncidencePrevalence_0.7.4.tgz(r-4.3-emscripten)
IncidencePrevalence.pdf |IncidencePrevalence.html
IncidencePrevalence/json (API)

# InstallIncidencePrevalence in R:
install.packages('IncidencePrevalence',repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/darwin-eu/incidenceprevalence/issues

20 exports 1 stars 1.24 score 49 dependencies 656 downloads

Last updated 4 days agofrom:44e9379059

Exports:%>%attritionbenchmarkIncidencePrevalencebindcohortCodelistcohortCountestimateIncidenceestimatePeriodPrevalenceestimatePointPrevalenceexportSummarisedResultgenerateDenominatorCohortSetgenerateTargetDenominatorCohortSetmockIncidencePrevalenceRefoptionsTableIncidenceoptionsTablePrevalenceparticipantsplotIncidenceplotPrevalencesettingssuppress

Dependencies:backportsbitbit64blobCDMConnectorcheckmateclicliprclockcpp11crayonDBIdbplyrdiffobjdplyrfansifsgenericsgluehmsjsonlitelifecyclelubridatemagrittromopgenericsPatientProfilespillarpkgconfigprettyunitsprogresspurrrR6readrrematch2rlangsnakecasestringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsvisOmopResultsvroomwaldowithr

Introduction to IncidencePrevalence

Rendered froma01_Introduction_to_IncidencePrevalence.Rmdusingknitr::rmarkdownon Jul 02 2024.

Last update: 2024-07-02
Started: 2023-03-27

Creating denominator cohorts

Rendered froma02_Creating_denominator_populations.Rmdusingknitr::rmarkdownon Jul 02 2024.

Last update: 2024-07-02
Started: 2023-03-27

Creating target denominator populations

Rendered froma03_Creating_target_denominator_populations.Rmdusingknitr::rmarkdownon Jul 02 2024.

Last update: 2024-07-02
Started: 2023-12-12

Calculating prevalence

Rendered froma04_Calculating_prevalence.Rmdusingknitr::rmarkdownon Jul 02 2024.

Last update: 2024-07-02
Started: 2023-03-27

Calculating incidence

Rendered froma05_Calculating_incidence.Rmdusingknitr::rmarkdownon Jul 02 2024.

Last update: 2024-07-02
Started: 2023-03-27

Plotting options

Rendered froma06_Plotting_options.Rmdusingknitr::rmarkdownon Jul 02 2024.

Last update: 2024-07-02
Started: 2024-03-22