Package: INSPIRE 1.5

Safiye Celik

INSPIRE: Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets

A method to infer modules of co-expressed genes and the dependencies among the modules from multiple expression datasets that may contain different sets of genes. Please refer to: Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer, Safiye Celik, Benjamin A. Logsdon, Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In Lee (2016) <doi:10.1186/s13073-016-0319-7>.

Authors:Safiye Celik

INSPIRE_1.5.tar.gz
INSPIRE_1.5.tar.gz(r-4.5-noble)INSPIRE_1.5.tar.gz(r-4.4-noble)
INSPIRE_1.5.tgz(r-4.4-emscripten)INSPIRE_1.5.tgz(r-4.3-emscripten)
INSPIRE.pdf |INSPIRE.html
INSPIRE/json (API)

# Install 'INSPIRE' in R:
install.packages('INSPIRE', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

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This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 7 scripts 122 downloads 296 mentions 1 exports 125 dependencies

Last updated 8 years agofrom:a11f7b924a. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 16 2024
R-4.5-linux-x86_64OKDec 16 2024

Exports:INSPIRE

Dependencies:abindbackportsbase64encbitbit64bootbroombslibcachemcarcarDataclicliprclustercodetoolscolorspacecowplotcpp11crayoncrosstalkDerivdigestdoBydoParalleldplyrDTellipseemmeansestimabilityevaluateFactoMineRfansifarverfastmapflashClustfontawesomeforcatsforeachFormulafsgenericsggplot2ggrepelglmnetgluegtablehavenhighrhmshtmltoolshtmlwidgetshttpuvisobanditeratorsjomojquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicemicrobenchmarkmimeminqamissMDAmitmlmodelrmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivordinalpanpbkrtestpillarpkgconfigprettyunitsprogresspromisespurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreadrrlangrmarkdownrpartsassscalesscatterplot3dshapeSparseMstringistringrsurvivaltibbletidyrtidyselecttinytextzdbucminfutf8vctrsviridisLitevroomwithrxfunyaml