Package: INSPIRE 1.5
Safiye Celik
INSPIRE: Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets
A method to infer modules of co-expressed genes and the dependencies among the modules from multiple expression datasets that may contain different sets of genes. Please refer to: Extracting a low-dimensional description of multiple gene expression datasets reveals a potential driver for tumor-associated stroma in ovarian cancer, Safiye Celik, Benjamin A. Logsdon, Stephanie Battle, Charles W. Drescher, Mara Rendi, R. David Hawkins and Su-In Lee (2016) <doi:10.1186/s13073-016-0319-7>.
Authors:
INSPIRE_1.5.tar.gz
INSPIRE_1.5.tar.gz(r-4.5-noble)INSPIRE_1.5.tar.gz(r-4.4-noble)
INSPIRE_1.5.tgz(r-4.4-emscripten)INSPIRE_1.5.tgz(r-4.3-emscripten)
INSPIRE.pdf |INSPIRE.html✨
INSPIRE/json (API)
| # Install 'INSPIRE' in R: |
| install.packages('INSPIRE', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- exmp_dataset1 - Example Gene Expression Dataset-1
- exmp_dataset2 - Example Gene Expression Dataset-2
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 years agofrom:a11f7b924a. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 16 2024 |
| R-4.5-linux-x86_64 | OK | Nov 16 2024 |
Exports:INSPIRE
Dependencies:abindbackportsbase64encbitbit64bootbroombslibcachemcarcarDataclicliprclustercodetoolscolorspacecowplotcpp11crayoncrosstalkDerivdigestdoBydoParalleldplyrDTellipseemmeansestimabilityevaluateFactoMineRfansifarverfastmapflashClustfontawesomeforcatsforeachFormulafsgenericsggplot2ggrepelglmnetgluegtablehavenhighrhmshtmltoolshtmlwidgetshttpuvisobanditeratorsjomojquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicemicrobenchmarkmimeminqamissMDAmitmlmodelrmultcompViewmunsellmvtnormnlmenloptrnnetnumDerivordinalpanpbkrtestpillarpkgconfigprettyunitsprogresspromisespurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreadrrlangrmarkdownrpartsassscalesscatterplot3dshapeSparseMstringistringrsurvivaltibbletidyrtidyselecttinytextzdbucminfutf8vctrsviridisLitevroomwithrxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Example Gene Expression Dataset-1 | exmp_dataset1 |
| Example Gene Expression Dataset-2 | exmp_dataset2 |
| Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets | INSPIRE |