Package: INCATome 1.0

Thomas Sbarrato

INCATome: Internal Control Analysis of Translatome Studies by Microarrays

Data analysis, normalisation and differential expression for Translatome studies by microarrays (T Sbarrato et al. RNA. 2017 Aug 25; <doi:10.1261/rna.060525.116>).

Authors:Sbarrato T. [cre,aut], Spriggs R.V. [cre,aut], Wilson L. [ctb], Jones C. [ctb], Dudek K. [ctb], Bastide A. [ctb], Pichon X. [ctb], Poyry T. [ctb] and Willis A.E. [ctb]

INCATome_1.0.tar.gz
INCATome_1.0.tar.gz(r-4.5-noble)INCATome_1.0.tar.gz(r-4.4-noble)
INCATome_1.0.tgz(r-4.4-emscripten)INCATome_1.0.tgz(r-4.3-emscripten)
INCATome.pdf |INCATome.html✨
INCATome/json (API)

# Install 'INCATome' in R:
install.packages('INCATome', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • INCATomeData - Translatome microarray dataset simulated from experimentally acquired translatome of Hela cells.

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 97 downloads 7 exports 56 dependencies

Last updated 7 years agofrom:35d3260dfd. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-linuxOKOct 30 2024

Exports:INCA.DEGINCA.DyeSwapINCA.MAPlotINCA.NormICINCA.NormSIINCA.PreProcessINCA.SpikePlot

Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenefilterGenomeInfoDbGenomeInfoDbDatagluegmphttrIRangesjsonliteKEGGRESTlatticelifecyclelimmaMASSMatrixMatrixGenericsmatrixStatsmemoisemimemulttestopensslpkgconfigplogrpngR6RankProdrlangRmpfrRSQLiteS4VectorsscrimesiggenesstatmodsurvivalsysUCSC.utilsvctrsXMLxtableXVectorzlibbioc