Package: IFP 0.2.4

Leeyoung Park

IFP: Identifying Functional Polymorphisms

A suite for identifying causal models using relative concordances and identifying causal polymorphisms in case-control genetic association data, especially with large controls re-sequenced data.

Authors:Park L

IFP_0.2.4.tar.gz
IFP_0.2.4.tar.gz(r-4.5-noble)IFP_0.2.4.tar.gz(r-4.4-noble)
IFP_0.2.4.tgz(r-4.4-emscripten)
IFP.pdf |IFP.html
IFP/json (API)

# Install 'IFP' in R:
install.packages('IFP', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:
  • apoe - Genetic data of APOE gene region
  • apoe7 - Genetic data of APOE gene region
  • apoeG - Sequencing data of APOE gene region from the 1000 Genomes Project
  • genoC - Sequencing data of APOE gene region from the 1000 Genomes Project
  • genoT - Sequencing data of APOE gene region from the 1000 Genomes Project

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.18 score 15 scripts 163 downloads 13 mentions 17 exports 80 dependencies

Last updated 4 years agofrom:9e1e01c849. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-linux-x86_64OKOct 31 2024

Exports:.lrtB.varEstallele.freqallele.freq.Gdrgegggnedrgegnedrgendrgenedrggndrgnerror.ratesgeno.freqgenotypehap.freqiter.mcmclrtlrtG

Dependencies:arsenalbackportsbase64encbslibcachemcheckmatecliclustercodacodetoolscolorspacedata.tabledigestevaluatefansifarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehaplo.statshighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixMatrixModelsmemoisemgcvmimemultcompmunsellmvtnormnlmennetpillarpkgconfigpolsplinequantregR6rappdirsRColorBrewerrlangrmarkdownrmsrpartrstudioapisandwichsassscalesSparseMstringistringrsurvivalTH.datatibbletinytexutf8vctrsviridisviridisLitewithrxfunyamlzoo