Package: IBDsim 0.9-8
Magnus Dehli Vigeland
IBDsim: Simulation of Chromosomal Regions Shared by Family Members
Simulation of segments shared identical-by-descent (IBD) by pedigree members. Using sex specific recombination rates along the human genome (Kong et. al (2010) <doi:10.1038/nature09525>), phased chromosomes are simulated for all pedigree members, either by unconditional gene dropping or conditional on a specified IBD pattern. Additional functions provide summaries and further analysis of the simulated genomes.
Authors:
IBDsim_0.9-8.tar.gz
IBDsim_0.9-8.tar.gz(r-4.5-noble)IBDsim_0.9-8.tar.gz(r-4.4-noble)
IBDsim_0.9-8.tgz(r-4.4-emscripten)IBDsim_0.9-8.tgz(r-4.3-emscripten)
IBDsim.pdf |IBDsim.html✨
IBDsim/json (API)
NEWS
| # Install 'IBDsim' in R: |
| install.packages('IBDsim', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:fb62209937. Checks:OK: 1 NOTE: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 09 2024 |
| R-4.5-linux-x86_64 | NOTE | Dec 09 2024 |
Exports:alleleSummaryIBDsimoneLocusIBDoneLocusJacquardtwoLocusIBDtwoLocusJacquard
Dependencies:assertthatdigestevaluategenericshighrkinship2knitrlatticeMatrixmaxLikmiscToolsparamlinkquadprogsandwichxfunyamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Allele sharing summary | alleleSummary |
| Decode recombination map | DecodeMap |
| Autosomal dominant pedigree | dominant1 |
| IBD simulation | IBDsim |
| Estimating pairwise IBD coefficients | oneLocusIBD |
| Estimating Jacquard's condensed identity coefficients | oneLocusJacquard |
| Estimating two-locus IBD coefficients | twoLocusIBD |
| Estimating two-locus Jacquard coefficients | twoLocusJacquard |