Package: HWEintrinsic 1.2.3

Sergio Venturini

HWEintrinsic: Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem

General (multi-allelic) Hardy-Weinberg equilibrium problem from an objective Bayesian testing standpoint. This aim is achieved through the identification of a class of priors specifically designed for this testing problem. A class of intrinsic priors under the full model is considered. This class is indexed by a tuning quantity, the training sample size, as discussed in Consonni, Moreno and Venturini (2010). These priors are objective, satisfy Savage's continuity condition and have proved to behave extremely well for many statistical testing problems.

Authors:Sergio Venturini

HWEintrinsic_1.2.3.tar.gz
HWEintrinsic_1.2.3.tar.gz(r-4.5-noble)HWEintrinsic_1.2.3.tar.gz(r-4.4-noble)
HWEintrinsic_1.2.3.tgz(r-4.4-emscripten)HWEintrinsic_1.2.3.tgz(r-4.3-emscripten)
HWEintrinsic.pdf |HWEintrinsic.html✨
HWEintrinsic/json (API)

# Install 'HWEintrinsic' in R:
install.packages('HWEintrinsic', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • GuoThompson8 - Guo and Thompson (1992) Eight Alleles Simulated Data
  • GuoThompson9 - Guo and Thompson (1992) Nine Alleles Data
  • LouisDempster - Louis and Dempster (1987) Four Alleles Data
  • Wordsworth - Wordsworth et al. (1992) Four Alleles Data
  • dataL1 - Lindley (1988) Two Alleles Data
  • dataL2 - Lindley (1988) Two Alleles Data
  • dataL3 - Lindley (1988) Two Alleles Data
  • dataL4 - Lindley (1988) Two Alleles Data
  • dataset1 - Two Alleles Simulated Data
  • dataset2 - Two Alleles Simulated Data
  • dataset3 - Two Alleles Simulated Data
  • dataset4 - Two Alleles Simulated Data

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.90 score 16 scripts 302 downloads 11 exports 0 dependencies

Last updated 1 years agofrom:c9184d7471. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 01 2024
R-4.5-linuxOKDec 01 2024

Exports:cip.2cip.tmphwe.bfhwe.ibfhwe.ibf.mchwe.ibf.plotip.2ip.tmplik.multinplotsummary

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
Objective Bayesian Testing for the Hardy-Weinberg Equilibrium ProblemHWEintrinsic-package HWEintrinsic
Graph of the Conditional Intrinsic Prior for a Two Alleles Datasetcip.2
Utility Functioncip.tmp
Guo and Thompson (1992) Eight Alleles Simulated DataGuoThompson8
Guo and Thompson (1992) Nine Alleles DataGuoThompson9
Standard Bayes Factor for the Hardy-Weinebrg Testing Problemhwe.bf
Testing Hardy-Weinberg Equilibrium Using an Intrinsic Prior Approachhwe.ibf
Testing Hardy-Weinberg Equilibrium Using an Intrinsic Prior Approachhwe.ibf.mc
Plot of an Hardy-Weinberg Testing Analysishwe.ibf.plot
Class "HWEdata". Data specification for the Hardy-Weinberg Testing Problem Using the Intrinsic Prior Approach.HWEdata HWEdata-class initialize,HWEdata-method
Class "HWEintr". Result for the Hardy-Weinberg Testing Problem Using the Intrinsic Prior Approach.HWEintr HWEintr-class initialize,HWEintr-method
Graph of the (Unconditional) Intrinsic Prior for a Two Alleles Datasetip.2
Utility Functionip.tmp
Utility Functionlik.multin
Lindley (1988) Two Alleles DatadataL1 dataL2 dataL3 dataL4 Lindley
Louis and Dempster (1987) Four Alleles DataLouisDempster
Plot of Hardy-Weinberg Data and Analysisplot,ANY,ANY-method plot,HWEdata,missing-method plot,HWEintr,missing-method plot-methods
Two Alleles Simulated Datadataset1 dataset2 dataset3 dataset4 simdata
Summary of Hardy-Weinberg Data and Analysissummary,ANY-method summary,HWEdata-method summary,HWEintr-method summary-methods
Wordsworth et al. (1992) Four Alleles DataWordsworth