Package: HMPTrees 1.4

Berkley Shands

HMPTrees: Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data

Tools to model, compare, and visualize populations of taxonomic tree objects.

Authors:Patricio S. La Rosa, Elena Deych, Berkley Shands, William D. Shannon

HMPTrees_1.4.tar.gz
HMPTrees_1.4.tar.gz(r-4.5-noble)HMPTrees_1.4.tar.gz(r-4.4-noble)
HMPTrees_1.4.tgz(r-4.4-emscripten)HMPTrees_1.4.tgz(r-4.3-emscripten)
HMPTrees.pdf |HMPTrees.html
HMPTrees/json (API)
NEWS

# Install 'HMPTrees' in R:
install.packages('HMPTrees', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.11 score 1 stars 13 scripts 198 downloads 23 exports 47 dependencies

Last updated 7 years agofrom:fab611dd1d. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-linuxOKNov 29 2024

Exports:buildTreecheckTreeValidHelpcheckTreeValiditycompareTwoDataSetscreateAndPlotcreateTreesdisplayLegendformatDatagenerateTreegetBranchSizesgetMLEandLoglikegetTaxaDepthmergeDataSetspairedCompareTwoDataSetsplotTreeplotTreeDataMDSremoveUnclasssubsetDatatransformHMPtoHMPTreetransformHMPTreetoHMPtraverseTreetraverseTreeHelptrimToTaxaLevel

Dependencies:apebitopscaToolscliclustercodetoolscolorspacedigestdirmultdoParallelfansifarverforeachggplot2gluegplotsgtablegtoolsHMPisobanditeratorsKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepermutepillarpkgconfigR6RColorBrewerRcpprlangrpartrpart.plotscalestibbleutf8vctrsveganviridisLitewithr

Categorical FDA Tutorial

Rendered fromCreating-Data-From-RDP-Tutorial.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2017-07-05
Started: 2013-09-16