Package: HMP 2.0.1
Berkley Shands
HMP: Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
Using Dirichlet-Multinomial distribution to provide several functions for formal hypothesis testing, power and sample size calculations for human microbiome experiments.
Authors:
HMP_2.0.1.tar.gz
HMP_2.0.1.tar.gz(r-4.5-noble)HMP_2.0.1.tar.gz(r-4.4-noble)
HMP_2.0.1.tgz(r-4.4-emscripten)HMP_2.0.1.tgz(r-4.3-emscripten)
HMP.pdf |HMP.html✨
HMP/json (API)
NEWS
# Install 'HMP' in R: |
install.packages('HMP', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 years agofrom:30dadecea2. Checks:OK: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 18 2024 |
R-4.5-linux | OK | Dec 18 2024 |
Exports:Barchart.dataC.alpha.multinomialData.filterDirichlet.multinomialDM.MoMDM.RpartDM.Rpart.BaseDM.Rpart.Base.OldDM.Rpart.CVDM.Rpart.CV.ConsensusEst.PIformatDataSetsgaCreationgaPlotgaScoringGen.AlgGen.Alg.ConsensusgetBCKullback.LeiblerkullbackLeiberloglikDMMC.Xdc.statisticsMC.Xmc.statisticsMC.Xmcupo.statisticsMC.Xoc.statisticsMC.Xsc.statisticsMC.ZT.statisticsMultinomialpioestPlot.MDSPlot.PIPlot.RM.BarchartPlot.RM.DotplotrpartCIrpartCSrpartCVrpartCVSinglerpartEvalrpartInitrpartSplitrpartSplitOldT.statisticsTest.PairedweirMoMXdc.sevsampleXdc.statisticsXdc.statistics.Hnull.HaXdc.statistics.MoMXmc.sevsampleXmc.statisticsXmc.statistics.Hnull.HaXmcupo.effectsizeXmcupo.sevsampleXmcupo.statisticsXmcupo.statistics.Hnull.HaXoc.sevsampleXoc.statisticsXoc.statistics.Hnull.HaXsc.onesampleXsc.statisticsXsc.statistics.Hnull.HaZ.statisticsZT.statistics.Hnull.Ha
Dependencies:bitopscaToolscliclustercodetoolscolorspacedirmultdoParallelfansifarverforeachggplot2gluegplotsgtablegtoolsisobanditeratorsKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepermutepillarpkgconfigR6RColorBrewerrlangrpartrpart.plotscalestibbleutf8vctrsveganviridisLitewithr