Package: GeneNet 1.2.16

Korbinian Strimmer

GeneNet: Modeling and Inferring Gene Networks

Analyzes gene expression (time series) data with focus on the inference of gene networks. In particular, GeneNet implements the methods of Schaefer and Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007) for learning large-scale gene association networks (including assignment of putative directions).

Authors:Juliane Schaefer, Rainer Opgen-Rhein, and Korbinian Strimmer.

GeneNet_1.2.16.tar.gz
GeneNet_1.2.16.tar.gz(r-4.5-noble)GeneNet_1.2.16.tar.gz(r-4.4-noble)
GeneNet_1.2.16.tgz(r-4.4-emscripten)GeneNet_1.2.16.tgz(r-4.3-emscripten)
GeneNet.pdf |GeneNet.html✨
GeneNet/json (API)
NEWS

# Install 'GeneNet' in R:
install.packages('GeneNet', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/strimmerlab/software/issues

Datasets:
  • arth800.descr - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • arth800.expr - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • arth800.mexpr - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • arth800.name - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • arth800.probe - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • arth800.symbol - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • ecoli - Microarray Time Series Data for 102 E. Coli Genes Genes

4.03 score 4 packages 89 scripts 791 downloads 87 mentions 16 exports 3 dependencies

Last updated 3 years agofrom:6c8654e69b. Checks:1 OK, 1 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 15 2025
R-4.5-linuxNOTEFeb 15 2025

Exports:cor0.testedge.infoextract.networkggm.estimate.pcorggm.list.edgesggm.simulate.dataggm.simulate.pcorhotelling.transformkappa2nn2kappanetwork.make.dotnetwork.make.graphnetwork.test.edgesnode.degreenum.nodesz.transform

Dependencies:corpcorfdrtoollongitudinal