Package: GeneNet 1.2.16

Korbinian Strimmer

GeneNet: Modeling and Inferring Gene Networks

Analyzes gene expression (time series) data with focus on the inference of gene networks. In particular, GeneNet implements the methods of Schaefer and Strimmer (2005a,b,c) and Opgen-Rhein and Strimmer (2006, 2007) for learning large-scale gene association networks (including assignment of putative directions).

Authors:Juliane Schaefer, Rainer Opgen-Rhein, and Korbinian Strimmer.

GeneNet_1.2.16.tar.gz
GeneNet_1.2.16.tar.gz(r-4.5-noble)GeneNet_1.2.16.tar.gz(r-4.4-noble)
GeneNet_1.2.16.tgz(r-4.4-emscripten)GeneNet_1.2.16.tgz(r-4.3-emscripten)
GeneNet.pdf |GeneNet.html✨
GeneNet/json (API)
NEWS

# Install 'GeneNet' in R:
install.packages('GeneNet', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/strimmerlab/software/issues

Datasets:
  • arth800.descr - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • arth800.expr - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • arth800.mexpr - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • arth800.name - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • arth800.probe - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • arth800.symbol - Time Series Expression Data for 800 Arabidopsis Thaliana Genes
  • ecoli - Microarray Time Series Data for 102 E. Coli Genes Genes

On CRAN:

Conda:

3.18 score 5 packages 705 downloads 87 mentions 16 exports 3 dependencies

Last updated 3 years agofrom:6c8654e69b. Checks:2 OK, 1 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 17 2025
R-4.5-linuxNOTEMar 17 2025
R-4.4-linuxOKMar 17 2025

Exports:cor0.testedge.infoextract.networkggm.estimate.pcorggm.list.edgesggm.simulate.dataggm.simulate.pcorhotelling.transformkappa2nn2kappanetwork.make.dotnetwork.make.graphnetwork.test.edgesnode.degreenum.nodesz.transform

Dependencies:corpcorfdrtoollongitudinal