Package: GeneCycle 1.1.5
Miika Ahdesmaki
GeneCycle: Identification of Periodically Expressed Genes
The GeneCycle package implements the approaches of Wichert et al. (2004) <doi:10.1093/bioinformatics/btg364>, Ahdesmaki et al. (2005) <doi:10.1186/1471-2105-6-117> and Ahdesmaki et al. (2007) <doi:10.1186/1471-2105-8-233> for detecting periodically expressed genes from gene expression time series data.
Authors:
GeneCycle_1.1.5.tar.gz
GeneCycle_1.1.5.tar.gz(r-4.5-noble)GeneCycle_1.1.5.tar.gz(r-4.4-noble)
GeneCycle_1.1.5.tgz(r-4.4-emscripten)GeneCycle_1.1.5.tgz(r-4.3-emscripten)
GeneCycle.pdf |GeneCycle.html✨
GeneCycle/json (API)
# Install 'GeneCycle' in R: |
install.packages('GeneCycle', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- caulobacter - Microarray Time Series Data for 1444 Caulobacter Crescentus Genes
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:b2329e7253. Checks:OK: 1 NOTE: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 31 2024 |
R-4.5-linux | NOTE | Oct 31 2024 |
Exports:avgpdominant.freqsdominant.freqs.singlefisher.g.testfisher.g.test.singlefit.DCfit.freqsfit.pig.statisticgPopCreateis.constantis.constant.singlemyresampleperiodogramperiodogram.freqperiodogram.specperiodogram.spec.singlerobust.g.testrobust.spectrumrobust.spectrum.singlespearman
Dependencies:corpcorfdrtoollongitudinalMASS
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Average Periodogram for Multiple (Genetic) Time Series | avgp avpg |
Microarray Time Series Data for 1444 Caulobacter Crescentus Genes | caulobacter |
Dominant Frequencies in Multiple (Genetic) Time Series | dominant.freqs |
Fisher's Exact g Test for Multiple (Genetic) Time Series | fisher.g.test |
Simple Check for Constant Time Series | is.constant |
Periodogram Power Spectral Density | periodogram |
Robust g Test for Multiple (Genetic) Time Series | robust.g.test robust.spectrum |