Package: GeneCycle 1.1.5

Miika Ahdesmaki

GeneCycle: Identification of Periodically Expressed Genes

The GeneCycle package implements the approaches of Wichert et al. (2004) <doi:10.1093/bioinformatics/btg364>, Ahdesmaki et al. (2005) <doi:10.1186/1471-2105-6-117> and Ahdesmaki et al. (2007) <doi:10.1186/1471-2105-8-233> for detecting periodically expressed genes from gene expression time series data.

Authors:Miika Ahdesmaki, Konstantinos Fokianos, and Korbinian Strimmer.

GeneCycle_1.1.5.tar.gz
GeneCycle_1.1.5.tar.gz(r-4.5-noble)GeneCycle_1.1.5.tar.gz(r-4.4-noble)
GeneCycle_1.1.5.tgz(r-4.4-emscripten)GeneCycle_1.1.5.tgz(r-4.3-emscripten)
GeneCycle.pdf |GeneCycle.html✨
GeneCycle/json (API)

# Install 'GeneCycle' in R:
install.packages('GeneCycle', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • caulobacter - Microarray Time Series Data for 1444 Caulobacter Crescentus Genes

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.80 score 1 stars 63 scripts 291 downloads 12 mentions 21 exports 4 dependencies

Last updated 4 years agofrom:b2329e7253. Checks:OK: 1 NOTE: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-linuxNOTENov 18 2024

Exports:avgpdominant.freqsdominant.freqs.singlefisher.g.testfisher.g.test.singlefit.DCfit.freqsfit.pig.statisticgPopCreateis.constantis.constant.singlemyresampleperiodogramperiodogram.freqperiodogram.specperiodogram.spec.singlerobust.g.testrobust.spectrumrobust.spectrum.singlespearman

Dependencies:corpcorfdrtoollongitudinalMASS