Package: GSelection 0.1.0

Sayanti Guha Majumdar

GSelection: Genomic Selection

Genomic selection is a specialized form of marker assisted selection. The package contains functions to select important genetic markers and predict phenotype on the basis of fitted training data using integrated model framework (Guha Majumdar et. al. (2019) <doi:10.1089/cmb.2019.0223>) developed by combining one additive (sparse additive models by Ravikumar et. al. (2009) <doi:10.1111/j.1467-9868.2009.00718.x>) and one non-additive (hsic lasso by Yamada et. al. (2014) <doi:10.1162/NECO_a_00537>) model.

Authors:Sayanti Guha Majumdar, Anil Rai, Dwijesh Chandra Mishra

GSelection_0.1.0.tar.gz
GSelection_0.1.0.tar.gz(r-4.5-noble)GSelection_0.1.0.tar.gz(r-4.4-noble)
GSelection_0.1.0.tgz(r-4.4-emscripten)GSelection_0.1.0.tgz(r-4.3-emscripten)
GSelection.pdf |GSelection.html
GSelection/json (API)

# Install 'GSelection' in R:
install.packages('GSelection', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • GS - Genotypic and phenotypic simulated dataset

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.11 score 13 scripts 170 downloads 7 exports 10 dependencies

Last updated 5 years agofrom:2e4a3bf36f. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 12 2024
R-4.5-linuxOKOct 12 2024

Exports:feature.selectiongenomic.predictionhsic.var.ensemblehsic.var.rcvREDspam.var.ensemblespam.var.rcv

Dependencies:gdatagtoolslatticeMatrixpenalizedRcppRcppArmadilloRcppEigenSAMsurvival