Package: GSA 1.03.3

Rob Tibshirani
GSA: Gene Set Analysis
Gene Set Analysis.
Authors:
GSA_1.03.3.tar.gz
GSA_1.03.3.tar.gz(r-4.7-any)GSA_1.03.3.tar.gz(r-4.6-any)
GSA_1.03.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
GSA/json (API)
| # Install 'GSA' in R: |
| install.packages('GSA', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:3f65ec0c77. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 94 | ||
| source / vignettes | OK | 138 | ||
| linux-release-x86_64 | OK | 103 | ||
| wasm-release | OK | 81 |
Exports:GSAGSA.correlateGSA.funcGSA.genescoresGSA.listsetsGSA.make.featuresGSA.plotGSA.read.gmtGSA.xl.correlateGSA.xl.genescoresGSA.xl.plotGSA.xl.summary.genesetsprint.GSAprint.GSA.funcsummary.GSA.genesets
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene set analysis | GSA |
| "Correlates" a gene set collection with a given list of gene nams | GSA.correlate |
| Gene set analysis without permutations | GSA.func |
| Individual gene scores from a gene set analysis | GSA.genescores |
| List the results from a Gene set analysis | GSA.listsets |
| Creates features from a GSA analysis that can be used in other procedures | GSA.make.features |
| Plot the results from a Gene set analysis | GSA.plot |
| Read in a gene set collection from a .gmt file | GSA.read.gmt |