Package: GSA 1.03.3
Rob Tibshirani
GSA: Gene Set Analysis
Gene Set Analysis.
Authors:
GSA_1.03.3.tar.gz
GSA_1.03.3.tar.gz(r-4.5-noble)GSA_1.03.3.tar.gz(r-4.4-noble)
GSA_1.03.3.tgz(r-4.4-emscripten)GSA_1.03.3.tgz(r-4.3-emscripten)
GSA.pdf |GSA.html✨
GSA/json (API)
| # Install 'GSA' in R: |
| install.packages('GSA', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 months agofrom:3f65ec0c77. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 19 2024 |
| R-4.5-linux | OK | Aug 19 2024 |
Exports:GSAGSA.correlateGSA.funcGSA.genescoresGSA.listsetsGSA.make.featuresGSA.plotGSA.read.gmtGSA.xl.correlateGSA.xl.genescoresGSA.xl.plotGSA.xl.summary.genesetsprint.GSAprint.GSA.funcsummary.GSA.genesets
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Gene set analysis | GSA |
| "Correlates" a gene set collection with a given list of gene nams | GSA.correlate |
| Gene set analysis without permutations | GSA.func |
| Individual gene scores from a gene set analysis | GSA.genescores |
| List the results from a Gene set analysis | GSA.listsets |
| Creates features from a GSA analysis that can be used in other procedures | GSA.make.features |
| Plot the results from a Gene set analysis | GSA.plot |
| Read in a gene set collection from a .gmt file | GSA.read.gmt |