This package is hidden from search results because it is not hosted in the universe of the upstream ownercran. To fix this you can add URL: https://cran.r-universe.dev/GCPBayes to the package DESCRIPTION file. See also theR-universe documentation.

Package: GCPBayes 4.3.0

Yazdan Asgari

GCPBayes: Bayesian Meta-Analysis of Pleiotropic Effects Using Group Structure

Run a Gibbs sampler for a multivariate Bayesian sparse group selection model with Dirac, continuous and hierarchical spike prior for detecting pleiotropy on the traits. This package is designed for summary statistics containing estimated regression coefficients and its estimated covariance matrix. The methodology is available from: Baghfalaki, T., Sugier, P. E., Truong, T., Pettitt, A. N., Mengersen, K., & Liquet, B. (2021) <doi:10.1002/sim.8855>.

Authors:Yazdan Asgari [aut, cre], Taban Baghfalaki [aut], Benoit Liquet [aut], Pierre-Emmanuel Sugier [aut], Mohammed Sedki [aut], Therese Truong [aut]

GCPBayes_4.3.0.tar.gz
GCPBayes_4.3.0.zip(r-4.7-x86_64)GCPBayes_4.3.0.zip(r-4.7-arm64)GCPBayes_4.3.0.zip(r-4.6-x86_64)GCPBayes_4.3.0.zip(r-4.6-arm64)
GCPBayes_4.3.0.tar.gz(r-4.7-arm64)GCPBayes_4.3.0.tar.gz(r-4.7-x86_64)GCPBayes_4.3.0.tar.gz(r-4.6-arm64)GCPBayes_4.3.0.tar.gz(r-4.6-x86_64)
GCPBayes_4.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
GCPBayes/json (API)

# Install 'GCPBayes' in R:

install.packages('GCPBayes', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tbaghfalaki/gcpbayes/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3

Datasets:

DNAJC1 - Gene DNAJC1 from BCAC and Epithyr studies
PARP2 - Gene PARP2 from CECILE study
PARP2_summary - Summary statistics of gene PARP2 from CECILE study
Simulated_individual - Simulated individual level data
Simulated_individual_survival - Simulated individual level survival data
Simulated_summary - Simulated summary statistics for K=5 traits

On CRAN:

openblas cpp

1.23 score 17 scripts 399 downloads 7 exports 27 dependencies

Last updated from:0c6b879b42. Checks:10 OK. Indexed: no.

Target	Result	Time
linux-devel-arm64	OK	125
linux-devel-x86_64	OK	148
source / vignettes	OK	149
linux-release-arm64	OK	119
linux-release-x86_64	OK	157
windows-devel-arm64	OK	204
windows-devel-x86_64	OK	153
windows-release-arm64	OK	224
windows-release-x86_64	OK	115
wasm-release	OK	104

Exports:CS DS HS MCMCplot summaryCS summaryDS summaryHS

Dependencies:abind backports checkmate cli distributional gdata generics glue gtools invgamma lifecycle magrittr MASS matrixStats mvtnorm numDeriv pillar pkgconfig posterior Rcpp RcppArmadillo rlang tensorA tibble truncnorm utf8 vctrs

Help page	Topics
Continuous Spike	CS
Gene DNAJC1 from BCAC and Epithyr studies	DNAJC1
Dirac Spike	DS
Internal: e2_Monte_Carlo_EM	e2_Monte_Carlo_EM
GCPBayes Package	GCPBayes-package GCPBayes
Hierarchical Spike	HS
MCMC plot	MCMCplot
Gene PARP2 from CECILE study	PARP2
Summary statistics of gene PARP2 from CECILE study	PARP2_summary
Simulated individual level data	Simulated_individual
Simulated individual level survival data	Simulated_individual_survival
Simulated summary statistics for K=5 traits	Simulated_summary
Summary function of Continuous Spike	summaryCS
Summary function of Dirac Spike	summaryDS
Summary function of Hierarchical Spike	summaryHS

Package: GCPBayes 4.3.0

GCPBayes: Bayesian Meta-Analysis of Pleiotropic Effects Using Group Structure

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)