Package: FishResp 1.1.2

Sergey Morozov

FishResp: Analytical Tool for Aquatic Respirometry

Calculates metabolic rate of fish and other aquatic organisms measured using an intermittent-flow respirometry approach. The tool is used to run a set of graphical QC tests of raw respirometry data, correct it for background respiration and chamber effect, filter and extract target values of absolute and mass-specific metabolic rate. Experimental design should include background respiration tests and measuring of one or more metabolic rate traits. The R package is ideally integrated with the pump controller 'PumpResp' and the DO meter 'SensResp' (open-source hardware by FishResp). Raw respirometry data can be also imported from 'AquaResp' (free software), 'AutoResp' ('LoligoSystems'), 'OxyView' ('PreSens'), 'Pyro Oxygen Logger' ('PyroScience') and 'Q-box Aqua' ('QubitSystems'). More information about the R package 'FishResp'is available in the publication by Morozov et al. (2019) <doi:10.1093/conphys/coz003>.

Authors:Sergey Morozov [aut, cre], Scott McCairns [aut], Juha Merila [ctb]

FishResp_1.1.2.tar.gz
FishResp_1.1.2.tar.gz(r-4.5-noble)FishResp_1.1.2.tar.gz(r-4.4-noble)
FishResp_1.1.2.tgz(r-4.4-emscripten)FishResp_1.1.2.tgz(r-4.3-emscripten)
FishResp.pdf |FishResp.html✨
FishResp/json (API)
NEWS

# Install 'FishResp' in R:
install.packages('FishResp', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • AMR - Active Metabolic Rate: Final Data
  • AMR.clean - Active Metabolic Rate: Corrected Raw Data
  • AMR.raw - Active Metabolic Rate: Raw Data
  • AMR.slope - Active Metabolic Rate: Extracted Slope
  • SMR - Standard Metabolic Rate: Final Data
  • SMR.clean - Standard Metabolic Rate: Corrected Raw Data
  • SMR.raw - Standard Metabolic Rate: Raw Data
  • SMR.slope - Standard Metabolic Rate: Extracted Slope
  • info - Info about Individuals and Chambers
  • post - Post Raw Data
  • pre - Pre Raw Data
  • results - Results of Analysis: SMR, AMR and MS

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.48 score 2 stars 33 scripts 721 downloads 3 mentions 17 exports 40 dependencies

Last updated 1 months agofrom:e39846bd37. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 13 2024
R-4.5-linuxOKDec 13 2024

Exports:calculate.MRconvert.respirometryconvert.rMRcorrect.measexport.MRextract.slopeimport.measimport.testinput.infoprepare.datapresens.aquaresppyroscience.aquaresppyroscience.pumprespQC.activityQC.measQC.sloperm.data

Dependencies:biglmbirkchronclicpp11DBIdplyrfansigenericsgluegswlatticelifecyclelubridatemagrittrmarelacMASSmclustmeasurementsminpack.lmnlmeocepillarpkgconfigplyrR6RcpprespirometryrlangrMRseacarbsegmentedshapeSolveSAPHEtibbletidyselecttimechangeutf8vctrswithr