Package: FinePop2 0.4

Reiichiro Nakamichi

FinePop2: Fine-Scale Population Analysis (Rewrite for Gene-Trait-Environment Interaction Analysis)

Statistical tool set for population genetics. The package provides following functions: 1) estimators of genetic differentiation (FST), 2) regression analysis of environmental effects on genetic differentiation using generalized least squares (GLS) method, 3) interfaces to read and manipulate 'GENEPOP' format data files). For more information, see Kitada, Nakamichi and Kishino (2020) <doi:10.1101/2020.01.30.927186>.

Authors:Reiichiro Nakamichi, Shuichi Kitada, Hirohisa Kishino

FinePop2_0.4.tar.gz
FinePop2_0.4.tar.gz(r-4.5-noble)FinePop2_0.4.tar.gz(r-4.4-noble)
FinePop2_0.4.tgz(r-4.4-emscripten)FinePop2_0.4.tgz(r-4.3-emscripten)
FinePop2.pdf |FinePop2.html✨
FinePop2/json (API)

# Install 'FinePop2' in R:
install.packages('FinePop2', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • herring - An example dataset of Atlantic herring.
  • jsmackerel - An example dataset of Japanese Spanich mackerel in GENEPOP and frequency format.

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 1 scripts 129 downloads 7 exports 0 dependencies

Last updated 5 years agofrom:6dc575b85a. Checks:2 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 09 2025
R-4.5-linuxOKFeb 09 2025

Exports:clip.GENEPOPglobalFSTGLSlocus_specificFSTpop_pairwiseFSTpop_specificFSTread.GENEPOP

Dependencies: