Package: FILEST 1.1.2
Kridsadakorn Chaichoompu
FILEST: Fine-Level Structure Simulator
A population genetic simulator, which is able to generate synthetic datasets for single-nucleotide polymorphisms (SNP) for multiple populations. The genetic distances among populations can be set according to the Fixation Index (Fst) as explained in Balding and Nichols (1995) <doi:10.1007/BF01441146>. This tool is able to simulate outlying individuals and missing SNPs can be specified. For Genome-wide association study (GWAS), disease status can be set in desired level according risk ratio.
Authors:
FILEST_1.1.2.tar.gz
FILEST_1.1.2.tar.gz(r-4.5-noble)FILEST_1.1.2.tar.gz(r-4.4-noble)
FILEST_1.1.2.tgz(r-4.4-emscripten)FILEST_1.1.2.tgz(r-4.3-emscripten)
FILEST.pdf |FILEST.html✨
FILEST/json (API)
NEWS
| # Install 'FILEST' in R: |
| install.packages('FILEST', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:849f8a9bae. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-linux | OK | Oct 31 2024 |
Exports:cbind_bigmatrixcreate.template.settingdemo.filestfilestrbind_bigmatrix
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Combind two matrices by column for big data, internally used for parallelization | cbind_bigmatrix |
| Create a template for a setting file of function filest | create.template.setting |
| Demonstration the filest function | demo.filest |
| Simulate data for multiple populations | filest |
| Combind two matrices by row for big data, internally used for parallelization | rbind_bigmatrix |