Package: FGRepo 1.3.2.0
Alireza Ani
FGRepo: Functional Genomics Repository for POST-GWAS Analysis
A collection of datasets essential for functional genomic analysis. Gene names, gene positions, cytoband information, sourced from Ensembl and phenotypes association graph prepared from GWAScatalog are included. Data is available in both GRCh37 and 38 builds. These datasets facilitate a wide range of genomic studies, including the identification of genetic variants, exploration of genomic features, and post-GWAS functional analysis.
Authors:
FGRepo_1.3.2.0.tar.gz
FGRepo_1.3.2.0.tar.gz(r-4.5-noble)FGRepo_1.3.2.0.tar.gz(r-4.4-noble)
FGRepo_1.3.2.0.tgz(r-4.4-emscripten)FGRepo_1.3.2.0.tgz(r-4.3-emscripten)
FGRepo.pdf |FGRepo.html✨
FGRepo/json (API)
| # Install 'FGRepo' in R: |
| install.packages('FGRepo', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- GWASCat_graph - GWAScatalog graph
- cytoband_grch37 - Cytoband information
- cytoband_grch38 - Cytoband information
- gene_names_grch37 - Gene Names
- gene_names_grch38 - Gene Names
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:ff98d31004. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 09 2024 |
| R-4.5-linux | OK | Dec 09 2024 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Cytoband information (GRCh37) | cytoband_grch37 |
| Cytoband information (GRCh38) | cytoband_grch38 |
| Gene Names (GRCh37) | gene_names_grch37 |
| Gene Names (GRCh38) | gene_names_grch38 |
| GWAScatalog graph | GWASCat_graph |