Package: EstMix 1.0.1

Xuan You

EstMix: Tumor Clones Percentage Estimations

Includes R functions for the estimation of tumor clones percentages for both snp data and (whole) genome sequencing data. See Cheng, Y., Dai, J. Y., Paulson, T. G., Wang, X., Li, X., Reid, B. J., & Kooperberg, C. (2017). Quantification of multiple tumor clones using gene array and sequencing data. The Annals of Applied Statistics, 11(2), 967-991, <doi:10.1214/17-AOAS1026> for more details.

Authors:Xuan You <[email protected]>, Yichen Cheng <[email protected]>

EstMix_1.0.1.tar.gz
EstMix_1.0.1.tar.gz(r-4.5-noble)EstMix_1.0.1.tar.gz(r-4.4-noble)
EstMix_1.0.1.tgz(r-4.4-emscripten)EstMix_1.0.1.tgz(r-4.3-emscripten)
EstMix.pdf |EstMix.html
EstMix/json (API)

# Install 'EstMix' in R:
install.packages('EstMix', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

    This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

    cpp

    1.00 score 2 scripts 161 downloads 23 exports 16 dependencies

    Last updated 6 years agofrom:1f28efc3a1. Checks:OK: 2. Indexed: yes.

    TargetResultDate
    Doc / VignettesOKDec 11 2024
    R-4.5-linux-x86_64OKDec 11 2024

    Exports:calc_1dcalc_1d_wgscalc_2dcalc_2d_wgscalc_3dcalc_ncalcll_1d_bafcalcll_bafcalcll_cppcalcll_p1_cppcalcll_p3combine_close_segest_mixtureest_mixture_wgsf_bafget_segmentationget_var_tcn_bafmean2preprocessingsel_scale_1dsel_scale_1d_wgssel_scale_2dsel_scale_2d_wgs

    Dependencies:aroma.lightcodetoolsdigestDNAcopyfutureglobalslistenvmatrixStatsparallellyPSCBSR.cacheR.methodsS3R.ooR.utilsRcppRcppArmadillo