Package: EpiLPS 1.3.0

Oswaldo Gressani

EpiLPS: A Fast and Flexible Bayesian Tool for Estimating Epidemiological Parameters

Estimation of epidemiological parameters with Laplacian-P-splines following the methodology of Gressani et al. (2022) <doi:10.1371/journal.pcbi.1010618>.

Authors:Oswaldo Gressani [aut, cre], Bryan Sumalinab [ctb]

EpiLPS_1.3.0.tar.gz
EpiLPS_1.3.0.tar.gz(r-4.5-noble)EpiLPS_1.3.0.tar.gz(r-4.4-noble)
EpiLPS_1.3.0.tgz(r-4.4-emscripten)EpiLPS_1.3.0.tgz(r-4.3-emscripten)
EpiLPS.pdf |EpiLPS.html
EpiLPS/json (API)
NEWS

# Install 'EpiLPS' in R:
install.packages('EpiLPS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/oswaldogressani/epilps/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • cov19incidence2022 - Incidence data for Belgium in 2022
  • cov19mort2021 - Mortality data for Belgium in 2021
  • eruptions - Eruption times in Yellowstone National Park
  • influenza2009 - Data on the 2009 pandemic influenza in Pennsylvania
  • sars2003 - Daily incidence of the 2003 SARS epidemic in Hong Kong
  • zika2015 - Data on the 2015 Zika virus disease in Colombia

openblascppopenmp

2.78 score 1 stars 12 scripts 276 downloads 12 exports 47 dependencies

Last updated 9 months agofrom:6899f2b6aa. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 04 2024
R-4.5-linux-x86_64OKDec 04 2024

Exports:epicurveepisimestimIncubestimRestimRmcmchistosmoothIdistincubsimnowcastingnowcastingRperfRestimRmodelpriors

Dependencies:aweekclicoarseDataToolscodacolorspaceEpiEstimfansifarverfitdistrplusggplot2gluegridExtragtableincidenceisobandlabelinglatticelifecyclemagrittrMASSMatrixMatrixModelsmcmcMCMCpackmgcvmunsellnlmepillarpkgconfigplyrquantregR6RColorBrewerRcppRcppArmadilloreshape2rlangscalesSparseMstringistringrsurvivaltibbleutf8vctrsviridisLitewithr

Reproduction number

Rendered fromReproduction-number.Rmdusingknitr::rmarkdownon Dec 04 2024.

Last update: 2023-08-30
Started: 2023-08-30