1 Motivation | 1.1 EpiLPS package architecture | 1.2 EpiLPS website and GitHub repository | 2 A simulated example | 2.1 Specification of a serial interval and data generation | 2.2 Estimation of the reproduction number | 2.3 Customizing graphical output | 3 Illustration on the Zika virus in Girardot, Colombia (2015) | 4 Illustration on outbreaks considered in Cori et al. (2013) | 4.1 Data on the measles epidemic in Germany (1861) | 4.2 Influenza pandemic in Baltimore (1918) | 4.3 Data on the SARS epidemic in Hong Kong (2003) | 5 Assessing statistical performance | References
This package is considered a duplicate. The official version of this package is found at:https://oswaldogressani.r-universe.dev/EpiLPS
Package: EpiLPS 1.3.0
Oswaldo Gressani
EpiLPS: A Fast and Flexible Bayesian Tool for Estimating Epidemiological Parameters
Estimation of epidemiological parameters with Laplacian-P-splines following the methodology of Gressani et al. (2022) <doi:10.1371/journal.pcbi.1010618>.
Authors:
EpiLPS_1.3.0.tar.gz
EpiLPS_1.3.0.zip(r-4.7-x86_64)EpiLPS_1.3.0.zip(r-4.7-arm64)EpiLPS_1.3.0.zip(r-4.6-x86_64)EpiLPS_1.3.0.zip(r-4.6-arm64)
EpiLPS_1.3.0.tar.gz(r-4.7-arm64)EpiLPS_1.3.0.tar.gz(r-4.7-x86_64)EpiLPS_1.3.0.tar.gz(r-4.6-arm64)EpiLPS_1.3.0.tar.gz(r-4.6-x86_64)
EpiLPS_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
EpiLPS/json (API)
| # Install 'EpiLPS' in R: |
| install.packages('EpiLPS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/oswaldogressani/epilps/issues
Uses libs:
Datasets:
- cov19incidence2022 - Incidence data for Belgium in 2022
- cov19mort2021 - Mortality data for Belgium in 2021
- eruptions - Eruption times in Yellowstone National Park
- influenza2009 - Data on the 2009 pandemic influenza in Pennsylvania
- sars2003 - Daily incidence of the 2003 SARS epidemic in Hong Kong
- zika2015 - Data on the 2015 Zika virus disease in Colombia
Last updated from:6899f2b6aa. Checks:10 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 142 | ||
| linux-devel-x86_64 | OK | 144 | ||
| source / vignettes | OK | 316 | ||
| linux-release-arm64 | OK | 136 | ||
| linux-release-x86_64 | OK | 143 | ||
| windows-devel-arm64 | OK | 246 | ||
| windows-devel-x86_64 | OK | 174 | ||
| windows-release-arm64 | OK | 241 | ||
| windows-release-x86_64 | OK | 172 | ||
| wasm-release | OK | 136 |
Exports:epicurveepisimestimIncubestimRestimRmcmchistosmoothIdistincubsimnowcastingnowcastingRperfRestimRmodelpriors
Dependencies:aweekclicoarseDataToolscodacpp11EpiEstimfarverfitdistrplusggplot2gluegridExtragtableincidenceisobandlabelinglatticelifecyclemagrittrMASSMatrixMatrixModelsmcmcMCMCpackplyrquantregR6RColorBrewerRcppRcppArmadilloreshape2rlangS7scalesSparseMstringistringrsurvivalvctrsviridisLitewithr
