Package: Ease 0.1.2
Ehouarn Le Faou
Ease: Simulating Explicit Population Genetics Models
Implementation in a simple and efficient way of fully customisable population genetics simulations, considering multiple loci that have epistatic interactions. Specifically suited to the modelling of multilocus nucleocytoplasmic systems (with both diploid and haploid loci), it is nevertheless possible to simulate purely diploid (or purely haploid) genetic models. Examples of models that can be simulated with Ease are numerous, for example models of genetic incompatibilities as presented by Marie-Orleach et al. (2022) <doi:10.1101/2022.07.25.501356>. Many others are conceivable, although few are actually explored, Ease having been developed in particular to provide a solution so that these kinds of models can be simulated simply.
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Ease_0.1.2.tar.gz
Ease_0.1.2.tar.gz(r-4.5-noble)Ease_0.1.2.tar.gz(r-4.4-noble)
Ease_0.1.2.tgz(r-4.4-emscripten)Ease_0.1.2.tgz(r-4.3-emscripten)
Ease.pdf |Ease.html✨
Ease/json (API)
NEWS
# Install 'Ease' in R: |
install.packages('Ease', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:fb28e39d51. Checks:OK: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 02 2024 |
R-4.5-linux-x86_64 | OK | Nov 02 2024 |
Exports:alleleFreqMatGenerationareThereHomozcatncheck.genomecheck.metapopulationcheck.mutationMatrixcheck.populationcheck.selectionextractAlleleCombgenotypinggetCustomOutputgetRecordsgetResultshaploCrossMatrixhaplotypingIDgenomeGenerationIDgenotypeGenerationIDhaplotypeGenerationis.correct.transition.matrixis.default.matrixis.probability.matrixisAffectedisHaploSelectFormulalistingmeiosisMatrixMETAPOP_SIMULATIONmutationmutMatFriendlymutMatRatesoutFunctprintrecombinationMatrixrowResultGenselectFormIntoVectselectInputTreatmentselection.form.treatmentsetGenomesetMetapopulationsetMutationMatrixsetPopulationsetSelectNeutralsetSelectOnGametessetSelectOnGametesProdsetSelectOnIndssimulatewhichHomoz
Dependencies:RcppRcppProgress