This package is considered a duplicate. The official version of this package is found at:https://yuyanwangsixtwo.r-universe.dev/EPLSIM

Package: EPLSIM 1.0.1

Yuyan Wang

EPLSIM: Partial Linear Single Index Models for Environmental Mixture Analysis

Collection of ancillary functions and utilities for Partial Linear Single Index Models for Environmental mixture analyses, which currently provides functions for scalar, binary and count outcomes. The outputs of these functions include the single index function, single index coefficients, partial linear coefficients, mixture overall effect, exposure main and interaction effects, and differences of quartile effects. In the future, we will add functions for ordinal, survival, and longitudinal outcomes, as well as models for time-dependent exposures. See Wang et al (2020) <doi:10.1186/s12940-020-00644-4> for an overview.

Authors:Yuyan Wang [aut, cre], Mengling Liu [aut, ctb], Myeonggyun Lee [ctb]

EPLSIM_1.0.1.tar.gz
EPLSIM_1.0.1.tar.gz(r-4.7-any)EPLSIM_1.0.1.tar.gz(r-4.6-any)
EPLSIM_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
EPLSIM/json (API)

# Install 'EPLSIM' in R:

install.packages('EPLSIM', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yuyanwangsixtwo/eplsim/issues

Datasets:

nhanes - This is data from NHANES 2003–2004
nhanes.new - This is an updated data from original data based on NHANES 2003–2004 survey

On CRAN:

2.70 score 4 scripts 349 downloads 12 exports 44 dependencies

Last updated from:0defa3300d. Checks:4 OK. Indexed: no.

Target	Result	Time
linux-devel-x86_64	OK	156
source / vignettes	OK	284
linux-release-x86_64	OK	186
wasm-release	OK	149

Exports:confounder.trans e.interaction.plot e.main.plot interquartile.quartile.plot mixture.overall.plot plsi.log.auto plsi.logistic.auto plsi.lr.auto plsi.lr.v1 plsi.lr.v2 si.coef.plot si.fun.plot

Dependencies:abind arm boot ciTools cli coda cpp11 dplyr farver generics ggplot2 glue gtable isoband labeling lattice lifecycle lme4 magrittr MASS Matrix mgcv minqa nlme nloptr pillar pkgconfig R6 rbibutils RColorBrewer Rcpp RcppEigen Rdpack reformulas rlang S7 scales survival tibble tidyselect utf8 vctrs viridisLite withr

An Introduction to EPLSIM Package

Rendered frommy-vignette.Rmdusingknitr::rmarkdown

Last update: 2026-07-20
Started: 2023-03-08

Help page	Topics
Transformation for confounders vector Z before modeling	confounder.trans
Plot interaction effect of two exposures from PLSIM	e.interaction.plot
Plot single exposure's main effect from PLSIM	e.main.plot
Plot interquartile effect of specific exposure based on quartile of other exposures	interquartile.quartile.plot
Plot mixture's overall effect based on quantile of exposures from PLSIM	mixture.overall.plot
This is data from NHANES 2003–2004	nhanes
This is an updated data from original data based on NHANES 2003–2004 survey	nhanes.new
Partial linear single index log-linear regression with automatic smoothness selection	plsi.log.auto
Partial linear single index logistic regression with automatic smoothness selection	plsi.logistic.auto
Partial linear single index regression with automatic smoothness selection	plsi.lr.auto
Partial linear single index linear regression for scalar outcome, earliest version	plsi.lr.v1
Partial linear single index linear regression for scalar outcome, second version	plsi.lr.v2
Plot estimated single index coefficients frpm PLSIM	si.coef.plot
Plot estimated single index function	si.fun.plot

Package: EPLSIM 1.0.1

EPLSIM: Partial Linear Single Index Models for Environmental Mixture Analysis

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)