Package: EBASE 1.1.0

Marcus Beck

EBASE: Estuarine Bayesian Single-Station Estimation Method for Ecosystem Metabolism

Estimate ecosystem metabolism in a Bayesian framework for individual water quality monitoring stations with continuous dissolved oxygen time series. A mass balance equation is used that provides estimates of parameters for gross primary production, respiration, and gas exchange. Methods adapted from Grace et al. (2015) <doi:10.1002/lom3.10011> and Wanninkhof (2014) <doi:10.4319/lom.2014.12.351>. Details in Beck et al. (2024) <doi:10.1002/lom3.10620>.

Authors:Marcus Beck [aut, cre], Maria Herrmann [aut], Jill Arriola [aut], Raymond Najjar [aut]

EBASE_1.1.0.tar.gz
EBASE_1.1.0.tar.gz(r-4.5-noble)EBASE_1.1.0.tar.gz(r-4.4-noble)
EBASE_1.1.0.tgz(r-4.4-emscripten)EBASE_1.1.0.tgz(r-4.3-emscripten)
EBASE.pdf |EBASE.html
EBASE/json (API)
NEWS

# Install 'EBASE' in R:
install.packages('EBASE', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/fawda123/ebase/issues

Pkgdown:https://fawda123.github.io

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • exdat - Sample data from Apalachicola NERRS
  • exres - Example results for four days from Apalachicola NERRS

jagscpp

3.56 score 18 scripts 222 downloads 14 exports 50 dependencies

Last updated 2 months agofrom:c1323c61c0. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 25 2024
R-4.5-linuxOKNov 25 2024

Exports:credible_plotcredible_prepebaseebase_eqboxyebase_formebase_plotebase_prepebase_rhoebase_schmidtebase_yearsfit_plotinterp_plotmetab_updateprior_plot

Dependencies:abindbootclicodacodetoolscolorspacecpp11doParalleldplyrfansifarverforeachgenericsggplot2gluegtableisobanditeratorslabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR2jagsR2WinBUGSR6RColorBrewerrjagsrlangscalesstringistringrtibbletidyrtidyselecttimechangetruncnormutf8vctrsviridisLitewithrzoo

EBASE overview

Rendered fromEBASE.Rmdusingknitr::rmarkdownon Nov 25 2024.

Last update: 2024-09-25
Started: 2024-03-09