Package: EBASE 1.1.0
EBASE: Estuarine Bayesian Single-Station Estimation Method for Ecosystem Metabolism
Estimate ecosystem metabolism in a Bayesian framework for individual water quality monitoring stations with continuous dissolved oxygen time series. A mass balance equation is used that provides estimates of parameters for gross primary production, respiration, and gas exchange. Methods adapted from Grace et al. (2015) <doi:10.1002/lom3.10011> and Wanninkhof (2014) <doi:10.4319/lom.2014.12.351>. Details in Beck et al. (2024) <doi:10.1002/lom3.10620>.
Authors:
EBASE_1.1.0.tar.gz
EBASE_1.1.0.tar.gz(r-4.5-noble)EBASE_1.1.0.tar.gz(r-4.4-noble)
EBASE_1.1.0.tgz(r-4.4-emscripten)EBASE_1.1.0.tgz(r-4.3-emscripten)
EBASE.pdf |EBASE.html✨
EBASE/json (API)
NEWS
# Install 'EBASE' in R: |
install.packages('EBASE', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/fawda123/ebase/issues
Pkgdown:https://fawda123.github.io
Last updated 2 months agofrom:c1323c61c0. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 25 2024 |
R-4.5-linux | OK | Nov 25 2024 |
Exports:credible_plotcredible_prepebaseebase_eqboxyebase_formebase_plotebase_prepebase_rhoebase_schmidtebase_yearsfit_plotinterp_plotmetab_updateprior_plot
Dependencies:abindbootclicodacodetoolscolorspacecpp11doParalleldplyrfansifarverforeachgenericsggplot2gluegtableisobanditeratorslabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR2jagsR2WinBUGSR6RColorBrewerrjagsrlangscalesstringistringrtibbletidyrtidyselecttimechangetruncnormutf8vctrsviridisLitewithrzoo
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Plot credible intervals for a, R, and b | credible_plot |
Get credible intervals for a, R, b | credible_prep |
Estuarine Bayesian Single-station Estimation method for ecosystem metabolism | ebase |
Oxygen saturation | ebase_eqboxy |
Format ebase output | ebase_form |
Plot results from EBASE | ebase_plot |
Prepare data for ebase | ebase_prep |
Seawater density calculation | ebase_rho |
Schmidt number calculation | ebase_schmidt |
Estuarine Bayesian Single-station Estimation method for ecosystem metabolism for long time series | ebase_years |
Sample data from Apalachicola NERRS | exdat |
Example results for four days from Apalachicola NERRS | exres |
Plot observed and modeled dissolved oxygen | fit_plot |
Create a diagnostic plot showing interpolated values prior to metabolism estimates | interp_plot |
Update metabolism jags fit | metab_update |
Plot prior distributions for a, R, and b | prior_plot |