Package: DynMSR 0.1.1
DynMSR: Connect Systems Biology and Pharmacology Formats to Simulation Backends
Provides a convenient R interface for systems-biology and systems-pharmacology models in Heta, SBML (Systems Biology Markup Language), and DynMS (Dynamic Model Specification) formats. DynMS JSON files are loaded directly; Heta projects and SBML files are converted to DynMS by an optional compatible installation of 'heta-compiler'. Models can be validated, selected from a platform, and generated or built for simulation with 'mrgsolve' as a backend.
Authors:
DynMSR_0.1.1.tar.gz
DynMSR_0.1.1.zip(r-4.7-any)DynMSR_0.1.1.zip(r-4.6-any)
DynMSR_0.1.1.tar.gz(r-4.7-any)DynMSR_0.1.1.tar.gz(r-4.6-any)
DynMSR_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
DynMSR/json (API)
| # Install 'DynMSR' in R: |
| install.packages('DynMSR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/hetalang/dynmsr/issues
Last updated from:df4d7749fd. Checks:6 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 148 | ||
| source / vignettes | OK | 254 | ||
| linux-release | OK | 131 | ||
| windows-devel | OK | 142 | ||
| windows-release | OK | 131 | ||
| wasm-release | OK | 116 |
Exports:build_mrgsolvedynms_libdynms_loaddynms_readdynms_validate_schemadynms_validate_semanticget_modelheta_buildheta_checkheta_loadsbml_loadwrite_mrgsolve
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compile a DynMS model with mrgsolve | build_mrgsolve |
| Locate bundled DynMS examples | dynms_lib |
| Load a DynMS platform | dynms_load |
| Read a DynMS JSON file | dynms_read |
| Validate a DynMS document against the JSON Schema | dynms_validate_schema |
| Validate DynMS semantic consistency | dynms_validate_semantic |
| Get one model from a platform | get_model |
| Build a Heta project | heta_build |
| Check Heta compiler availability | heta_check |
| Load a Heta project as a DynMS platform | heta_load |
| Print a DynMS model | print.model |
| Print a DynMS platform | print.platform |
| Load an SBML file as a DynMS platform | sbml_load |
| Write an mrgsolve model file | write_mrgsolve |
