Package: DiscreteFDR 2.0.1

Florian Junge

DiscreteFDR: FDR Based Multiple Testing Procedures with Adaptation for Discrete Tests

Implementations of the multiple testing procedures for discrete tests described in the paper Döhler, Durand and Roquain (2018) "New FDR bounds for discrete and heterogeneous tests" <doi:10.1214/18-EJS1441>. The main procedures of the paper (HSU and HSD), their adaptive counterparts (AHSU and AHSD), and the HBR variant are available and are coded to take as input the results of a test procedure from package 'DiscreteTests', or a set of observed p-values and their discrete support under their nulls. A shortcut function to obtain such p-values and supports is also provided, along with a wrapper allowing to apply discrete procedures directly to data.

Authors:Sebastian Döhler [aut, ctb], Florian Junge [aut, ctb, cre], Guillermo Durand [aut, ctb], Etienne Roquain [ctb], Christina Kihn [ctb]

DiscreteFDR_2.0.1.tar.gz
DiscreteFDR_2.0.1.tar.gz(r-4.5-noble)DiscreteFDR_2.0.1.tar.gz(r-4.4-noble)
DiscreteFDR_2.0.1.tgz(r-4.4-emscripten)DiscreteFDR_2.0.1.tgz(r-4.3-emscripten)
DiscreteFDR.pdf |DiscreteFDR.html✨
DiscreteFDR/json (API)
NEWS

# Install 'DiscreteFDR' in R:
install.packages('DiscreteFDR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/disohda/discretefdr/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

3.76 score 1 packages 16 scripts 381 downloads 8 exports 11 dependencies

Last updated 6 days agofrom:8b83d4a6a2. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-linux-x86_64OKOct 25 2024

Exports:ADBHDBHDBRdirect.discrete.BHdiscrete.BHfast.Discretefisher.pvalues.supportgenerate.pvalues

Dependencies:backportscheckmatecliDiscreteDatasetsDiscreteTestsgluelifecycleR6RcppRcppArmadillorlang

A Toy Example

Rendered fromtoyexample.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2024-10-24
Started: 2024-07-09

DiscreteFDR: An R package for controlling the false discovery rate for discrete test statistics

Rendered fromDiscreteFDR_vignette.pdf.asisusingR.rsp::asison Oct 25 2024.

Last update: 2020-02-14
Started: 2019-07-12

Further Analyses

Rendered fromfurtheranalyses.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2024-10-24
Started: 2024-07-09

Introduction to DiscreteFDR

Rendered fromDiscreteFDR.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2024-07-09
Started: 2019-11-13

Readme and manuals

Help Manual

Help pageTopics
Wrapper Functions for the Adaptive Discrete Benjamini-Hochberg ProcedureADBH ADBH.default ADBH.DiscreteTestResults
Wrapper Functions for the Discrete Benjamini-Hochberg ProcedureDBH DBH.default DBH.DiscreteTestResults
The Discrete Blanchard-Roquain ProcedureDBR DBR.default DBR.DiscreteTestResults
Direct Application of Multiple Testing Procedures to Datasetdirect.discrete.BH
The Discrete Benjamini-Hochberg Procedurediscrete.BH discrete.BH.default discrete.BH.DiscreteTestResults
FDR-based Multiple Testing Procedures with Adaptation for Discrete TestsDiscreteFDR-package DiscreteFDR
Fast Application of Discrete Multiple Testing Proceduresfast.Discrete
Computing Discrete P-Values and Their Supports for Fisher's Exact Testfisher.pvalues.support
Generation of P-Values and Their Supports After Data Transformationsgenerate.pvalues
Histogram of Raw P-Valueshist.DiscreteFDR
Kernel Functionskernel kernel_ADBH_crit kernel_ADBH_fast kernel_DBH_crit kernel_DBH_fast kernel_DBR_crit kernel_DBR_fast
Plot Method for 'DiscreteFDR' objectsplot.DiscreteFDR
Printing DiscreteFDR resultsprint.DiscreteFDR
Summarizing Discrete FDR Resultsprint.summary.DiscreteFDR summary.DiscreteFDR