Package: DR.SC 3.4
Wei Liu
DR.SC: Joint Dimension Reduction and Spatial Clustering
Joint dimension reduction and spatial clustering is conducted for Single-cell RNA sequencing and spatial transcriptomics data, and more details can be referred to Wei Liu, Xu Liao, Yi Yang, Huazhen Lin, Joe Yeong, Xiang Zhou, Xingjie Shi and Jin Liu. (2022) <doi:10.1093/nar/gkac219>. It is not only computationally efficient and scalable to the sample size increment, but also is capable of choosing the smoothness parameter and the number of clusters as well.
Authors:
DR.SC_3.4.tar.gz
DR.SC_3.4.tar.gz(r-4.5-noble)DR.SC_3.4.tar.gz(r-4.4-noble)
DR.SC_3.4.tgz(r-4.4-emscripten)
DR.SC.pdf |DR.SC.html✨
DR.SC/json (API)
| # Install 'DR.SC' in R: |
| install.packages('DR.SC', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/feiyoung/dr.sc/issues
- dlpfc151510 - A human dorsolateral prefrontal cortex data
Last updated 9 months agofrom:2362ca7981. Checks:OK: 1 WARNING: 1. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 15 2024 |
| R-4.5-linux-x86_64 | WARNING | Nov 15 2024 |
Exports:DR.SCDR.SC_fitdrscPlotFindSVGsgendata_RNAExpgetAdjgetAdj_autogetAdj_manualmbicPlotread10XVisiumreadscRNAseqRunWPCAselectModelspatialPlotClusterstopSVGs
Dependencies:abindaskpassbase64encBHBiocGenericsbitopsbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkCompQuadFormcowplotcpp11crayoncrosstalkcurldata.tabledeldirdigestdotCall64dplyrdqrngevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsggplot2ggrepelggridgesGiRaFglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleidenlifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmclustmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsneS4VectorssassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableyamlzoo
DR-SC: installation
Rendered fromDR-SC.Rmdusingknitr::rmarkdownon Nov 15 2024.Last update: 2022-02-23
Started: 2021-11-19
DR-SC: DLPFC Data Analysis
Rendered fromDR.SC.DLPFC.Rmdusingknitr::rmarkdownon Nov 15 2024.Last update: 2024-03-20
Started: 2022-11-15
DR-SC: simulation
Rendered fromDR.SC.Simu.Rmdusingknitr::rmarkdownon Nov 15 2024.Last update: 2024-03-20
Started: 2021-11-19
