Package: DNAmotif 0.1.1

Subham Ghosh

DNAmotif: DNA Sequence Motifs

Motifs within biological sequences show a significant role. This package utilizes a user-defined threshold value (window size and similarity) to create consensus segments or motifs through local alignment of dynamic programming with gap and it calculates the frequency of each identified motif, offering a detailed view of their prevalence within the dataset. It allows for thorough exploration and understanding of sequence patterns and their biological importance.

Authors:Subham Ghosh [aut, cre], UB Angadi [aut], Md Yeasin [aut], Dipro Sinha [aut], Saikath Das [aut], Mir Asif Iquebal [aut], Sarika [aut]

DNAmotif_0.1.1.tar.gz
DNAmotif_0.1.1.tar.gz(r-4.5-noble)DNAmotif_0.1.1.tar.gz(r-4.4-noble)
DNAmotif_0.1.1.tgz(r-4.4-emscripten)DNAmotif_0.1.1.tgz(r-4.3-emscripten)
DNAmotif.pdf |DNAmotif.html✨
DNAmotif/json (API)

# Install 'DNAmotif' in R:
install.packages('DNAmotif', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

1.30 score 155 downloads 1 exports 20 dependencies

Last updated 3 months agofrom:0223d659cd. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 26 2024
R-4.5-linux-x86_64OKNov 26 2024

Exports:DNAmotifs

Dependencies:askpassBiocGenericsBiostringscrayoncurlgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslR6RcppS4VectorssysUCSC.utilsXVectorzlibbioc