Package: DNAmotif 0.1.1

Subham Ghosh

DNAmotif: DNA Sequence Motifs

Motifs within biological sequences show a significant role. This package utilizes a user-defined threshold value (window size and similarity) to create consensus segments or motifs through local alignment of dynamic programming with gap and it calculates the frequency of each identified motif, offering a detailed view of their prevalence within the dataset. It allows for thorough exploration and understanding of sequence patterns and their biological importance.

Authors:Subham Ghosh [aut, cre], UB Angadi [aut], Md Yeasin [aut], Dipro Sinha [aut], Saikath Das [aut], Mir Asif Iquebal [aut], Sarika [aut]

DNAmotif_0.1.1.tar.gz
DNAmotif_0.1.1.tar.gz(r-4.5-noble)DNAmotif_0.1.1.tar.gz(r-4.4-noble)
DNAmotif_0.1.1.tgz(r-4.4-emscripten)DNAmotif_0.1.1.tgz(r-4.3-emscripten)
DNAmotif.pdf |DNAmotif.html✨
DNAmotif/json (API)

# Install 'DNAmotif' in R:
install.packages('DNAmotif', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

1.30 score 137 downloads 1 exports 19 dependencies

Last updated 5 months agofrom:0223d659cd. Checks:2 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 25 2025
R-4.5-linux-x86_64OKJan 25 2025

Exports:DNAmotifs

Dependencies:askpassBiocGenericsBiostringscrayoncurlgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslR6RcppS4VectorssysUCSC.utilsXVector