Package: DNAmotif 0.1.1
Subham Ghosh
DNAmotif: DNA Sequence Motifs
Motifs within biological sequences show a significant role. This package utilizes a user-defined threshold value (window size and similarity) to create consensus segments or motifs through local alignment of dynamic programming with gap and it calculates the frequency of each identified motif, offering a detailed view of their prevalence within the dataset. It allows for thorough exploration and understanding of sequence patterns and their biological importance.
Authors:
DNAmotif_0.1.1.tar.gz
DNAmotif_0.1.1.tar.gz(r-4.7-arm64)DNAmotif_0.1.1.tar.gz(r-4.7-x86_64)DNAmotif_0.1.1.tar.gz(r-4.6-arm64)DNAmotif_0.1.1.tar.gz(r-4.6-x86_64)
DNAmotif_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DNAmotif/json (API)
| # Install 'DNAmotif' in R: |
| install.packages('DNAmotif', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:0223d659cd. Checks:6 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 138 | ||
| linux-devel-x86_64 | OK | 148 | ||
| source / vignettes | OK | 207 | ||
| linux-release-arm64 | OK | 174 | ||
| linux-release-x86_64 | OK | 150 | ||
| wasm-release | OK | 109 |
Exports:DNAmotifs
Dependencies:BiocGenericsBiostringscrayongenericsIRangesRcppS4VectorsSeqinfoXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Generation of motifs from DNA sequences | DNAmotifs |