Package: DICErClust 0.1.3

Sarah Ayton
DICErClust: Deep Significance Clustering for Clinical Risk Stratification
We provide an R implementation of Deep Significance Clustering (DICE), a self-supervised learning framework designed to identify clinically meaningful and risk-stratified patient subgroups from electronic health record (EHR) data. DICE jointly optimizes deep representation learning, clustering, and outcome prediction while enforcing statistical significance between predicted outcomes and cluster membership. This integrated optimization produces subgroups that are both clinically coherent and predictive, addressing a gap where traditional unsupervised clustering methods and supervised risk prediction models alone may fail to generate actionable clinical groupings. See Huang et al. (2021) <doi:10.1093/jamia/ocab203>.
Authors:
DICErClust_0.1.3.tar.gz
DICErClust_0.1.3.tar.gz(r-4.7-any)DICErClust_0.1.3.tar.gz(r-4.6-any)
DICErClust_0.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
DICErClust/json (API)
| # Install 'DICErClust' in R: |
| install.packages('DICErClust', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:e1bd5047df. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 152 | ||
| source / vignettes | OK | 248 | ||
| linux-release-x86_64 | OK | 154 | ||
| wasm-release | OK | 122 |
Exports:analysis_p_value_relatedanalysis_p_value_related_onlycchange_label_from_highratio_to_lowratioDecoderRNNDICErEncoderRNNfunc_analysis_test_error_D0406mainmodel_2p_value_calculateparse_argstest_AEupdate_Mupdate_testset_R_C_M_K
Dependencies:argparserbitbit64callrclicorocpp11descfarverggplot2gluegtableisobandjsonlitelabelinglifecyclemagrittrotelpROCprocessxpsR6RColorBrewerRcpprlangS7safetensorsscalestorchvctrsviridisLitewithr
Last update: 2026-05-28
Started: 2026-05-28
Last update: 2026-05-28
Started: 2026-05-28
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Analyze P-Value and Outcome Ratios for Clusters | analysis_p_value_related |
| Analyze P-Value and Outcome Ratios for Clusters Using Only Cluster Information | analysis_p_value_related_onlyc |
| Reassign Cluster Labels Based on Outcome Ratios | change_label_from_highratio_to_lowratio |
| DecoderRNN Neural Network Module | DecoderRNN |
| DICEr Function for Training and Evaluating a Deep Learning Model | DICEr |
| EncoderRNN Neural Network Module | EncoderRNN |
| Analyze Test Error and Performance Metrics for a Model | func_analysis_test_error_D0406 |
| Main Function for Training and Evaluating a Deep Learning Model | main |
| model_2 Neural Network Module | model_2 |
| Calculate P-Value for Logistic Regression Model | p_value_calculate |
| Parse Command-Line Arguments for PPD-Aware Clustering | parse_args |
| Evaluate Autoencoder Model on Test Data | test_AE |
| Update Cluster Embeddings in Matrix M | update_M |
| Update Test Set Representations, Cluster Assignments, and Cluster Centers | update_testset_R_C_M_K |