Package: CoreMicrobiomeR 0.1.0

Mohammad Samir Farooqi

CoreMicrobiomeR: Identification of Core Microbiome

The Core Microbiome refers to the group of microorganisms that are consistently present in a particular environment, habitat, or host species. These microorganisms play a crucial role in the functioning and stability of that ecosystem. Identifying these microorganisms can contribute to the emerging field of personalized medicine. The 'CoreMicrobiomeR' is designed to facilitate the identification, statistical testing, and visualization of this group of microorganisms.This package offers three key functions to analyze and visualize microbial community data. This package has been developed based on the research papers published by Pereira et al.(2018) <doi:10.1186/s12864-018-4637-6> and Beule L, Karlovsky P. (2020) <doi:10.7717/peerj.9593>.

Authors:Sorna A M [aut], Mohammad Samir Farooqi [aut, cre], Dwijesh Chandra Mishra [aut], Krishna Kumar Chaturvedi [aut], Anu Sharma [aut], Prawin Arya [aut], Sudhir Srivastava [aut], Sharanbasappa [aut], Girish Kumar Jha [aut], Kabilan S [ctb]

CoreMicrobiomeR_0.1.0.tar.gz
CoreMicrobiomeR_0.1.0.tar.gz(r-4.5-noble)CoreMicrobiomeR_0.1.0.tar.gz(r-4.4-noble)
CoreMicrobiomeR_0.1.0.tgz(r-4.4-emscripten)CoreMicrobiomeR_0.1.0.tgz(r-4.3-emscripten)
CoreMicrobiomeR.pdf |CoreMicrobiomeR.html
CoreMicrobiomeR/json (API)

# Install 'CoreMicrobiomeR' in R:
install.packages('CoreMicrobiomeR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • demo_md - Arabidopsis thaliana - Metadata dataset
  • demo_otu - Arabidopsis thaliana - OTU dataset
  • demo_tax - Arabidopsis thaliana - Taxonomy dataset

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 175 downloads 5 exports 91 dependencies

Last updated 9 months agofrom:1df1ed8891. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 19 2024
R-4.5-linuxOKDec 19 2024

Exports:CoreMicrobiomegroup_bar_plotssignificancestacked_bar_plotsvisualize

Dependencies:askpassbase64encbslibcachemcliclustercolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledigestdplyrDTedgeRevaluatefansifarverfastmapfastmatchfontawesomefsgenericsggplot2ggrepelgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmalocfitmagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpermutepillarpkgconfigplotlyplyrpromisespurrrR6rappdirsRColorBrewerRcppreshape2rlangrmarkdownsassscalesshinyshinybusyshinycssloaderssourcetoolsSRSstatmodstringistringrsystibbletidyrtidyselecttinytexutf8vctrsveganviridisLitewithrxfunxtableyaml