Package: Colossus 1.5.1
Colossus: "Risk Model Regression and Analysis with Complex Non-Linear Models"
Performs survival analysis using general non-linear models. Risk models can be the sum or product of terms. Each term is the product of exponential/linear functions of covariates. Additionally sub-terms can be defined as a sum of exponential, linear threshold, and step functions. Cox Proportional hazards <https://en.wikipedia.org/wiki/Proportional_hazards_model>, Poisson <https://en.wikipedia.org/wiki/Poisson_regression>, and Fine-Gray competing risks <https://www.publichealth.columbia.edu/research/population-health-methods/competing-risk-analysis> regression are supported. This work was sponsored by NASA Grants 80NSSC19M0161 and 80NSSC23M0129 through a subcontract from the National Council on Radiation Protection and Measurements (NCRP). The computing for this project was performed on the Beocat Research Cluster at Kansas State University, which is funded in part by NSF grants CNS-1006860, EPS-1006860, EPS-0919443, ACI-1440548, CHE-1726332, and NIH P20GM113109.
Authors:
Colossus_1.5.1.tar.gz
Colossus_1.5.1.tar.gz(r-4.7-arm64)Colossus_1.5.1.tar.gz(r-4.7-x86_64)Colossus_1.5.1.tar.gz(r-4.6-arm64)Colossus_1.5.1.tar.gz(r-4.6-x86_64)
Colossus_1.5.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Colossus/json (API)
NEWS
| # Install 'Colossus' in R: |
| install.packages('Colossus', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ericgiunta/colossus/issues
Pkgdown/docs site:https://ericgiunta.github.io
Last updated from:c46535b109. Checks:6 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 306 | ||
| linux-devel-x86_64 | OK | 284 | ||
| source / vignettes | OK | 438 | ||
| linux-release-arm64 | OK | 285 | ||
| linux-release-x86_64 | OK | 307 | ||
| wasm-release | OK | 225 |
Exports:CaseControlRunColossusCoxSurvColossusLogitSurvColossusPoisSurvCoxRunCoxRunMultiDate_ShiftEvent_Count_GenEvent_Time_GenEventAssignmentfactorizegen_time_depget_formget_form_jointJoint_Multiple_EventsLikelihood_Ratio_TestLikelihoodBoundLinked_Dose_FormulaLinked_Lin_Exp_ParaLogisticRunplotMartingaleplotRiskplotSchoenfeldplotSurvivalPoisRunPoisRunJointPoisRunMultiRelativeRiskReplace_MissingResidualSystem_VersionTime_Since
Dependencies:briocallrclicpp11crayondata.tabledescdiffobjdplyrevaluatefsgenericsgluejsonlitelifecyclelubridatemagrittrpillarpkgbuildpkgconfigpkgloadpraiseprocessxpsR6RcppRcppEigenrlangrprojrootstringistringrtestthattibbletidyselecttimechangeutf8vctrswaldowithr
Alternative Regression Options
Rendered fromAlt_Run_Opt.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2026-04-17
Started: 2024-09-07
Colossus Description
Rendered fromStarting-Description.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2026-04-17
Started: 2024-09-07
Confidence Interval Selection
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Started: 2024-09-07
Dose Response Formula Terms
Rendered fromDose_Formula_Inputs.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2026-04-17
Started: 2024-09-07
Excess and Predicted Cases
Rendered fromExcess_and_Predicted_Cases.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2026-04-17
Started: 2024-10-21
Functions for Plotting and Analysis
Rendered fromPlotting_And_Analysis.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2026-04-17
Started: 2024-02-21
Generating Person-Count and Person-Time Tables
Rendered fromcount_time_tables.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2026-04-17
Started: 2025-02-13
Gradient and Hessian Approaches
Rendered fromGrad_Hess.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2026-04-17
Started: 2025-02-13
List of Control Options
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Logistic Regression
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Matched Case-Control Logistic Regression
Rendered fromMatched_Case_Control.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2026-04-17
Started: 2025-06-05
Multiple Realization Methods
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Script comparisons with 32-bit Epicure
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Started: 2024-09-07
SMR Analysis
Rendered fromSMR_Analysis.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2026-04-17
Started: 2025-02-13
Time Dependent Covariate Use
Rendered fromTime_Dep_Cov.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2026-04-17
Started: 2023-09-28
Unified Equation Representation
Rendered fromEquation_Expression.Rmdusingknitr::rmarkdownon May 22 2026.Last update: 2026-04-17
Started: 2025-02-13
