Set up | Estimating survival with competing risk | With stratification | Disconnect from the cdm database connection
This package is considered a duplicate. The official version of this package is found at:https://darwin-eu.r-universe.dev/CohortSurvival
Package: CohortSurvival 1.1.2
Kim López-Güell
CohortSurvival: Estimate Survival from Common Data Model Cohorts
Estimate survival using data mapped to the Observational Medical Outcomes Partnership common data model. Survival can be estimated based on user-defined study cohorts.
Authors:
CohortSurvival_1.1.2.tar.gz
CohortSurvival_1.1.2.tar.gz(r-4.7-any)CohortSurvival_1.1.2.tar.gz(r-4.6-any)
CohortSurvival_1.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
CohortSurvival/json (API)
| # Install 'CohortSurvival' in R: |
| install.packages('CohortSurvival', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/darwin-eu/cohortsurvival/issues
Pkgdown/docs site:https://darwin-eu.github.io
Last updated from:3d5fbe9ac4. Checks:4 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 209 | ||
| source / vignettes | OK | 351 | ||
| linux-release-x86_64 | OK | 219 | ||
| wasm-release | OK | 166 |
Exports:addCohortSurvivalasSurvivalResultattritionavailableSurvivalGroupingbindcohortCodelistcohortCountestimateCompetingRiskSurvivalestimateSingleEventSurvivalexportSummarisedResultimportSummarisedResultmockMGUS2cdmoptionsTableSurvivalplotSurvivalriskTablesettingssuppresstableSurvivaltableSurvivalAttritiontableSurvivalEvents
Dependencies:backportsblobbroomcliclockcpp11DBIdbplyrdplyrgenericsgluelatticelifecyclemagrittrMatrixomopgenericsPatientProfilespillarpkgconfigpurrrR6rlangsnakecasestringistringrsurvivaltibbletidyrtidyselecttzdbutf8vctrswithr
Competing risk survival
Last update: 2026-07-03
Started: 2023-12-08
Creating cohorts for survival analyses
Set up | Cohorts needed for survival | Target cohort design | Outcome cohort design | Competing outcome design | Adding strata | Multiple cohorts in one table | Pre-analysis checklist | Disconnect from the cdm database connection
Last update: 2026-07-03
Started: 2026-07-03
Further survival analyses
Set up | Further analysis with single event survival | Further analysis with competing risk survival | Disconnect from the cdm database connection
Last update: 2026-07-03
Started: 2024-05-07
Single outcome event of interest
Set up | Overall survival | Survival format | Changing estimation parameters | With stratification | Multiple target or outcome cohorts | Checking the assumption of proportionality between outcomes | Export and import a survival output | Disconnect from the cdm database connection
Last update: 2026-07-03
Started: 2023-12-08
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add time and event status to a cohort table | addCohortSurvival |
| Convert survival summarised results to a survival-specific format | asSurvivalResult |
| Variables that can be used for faceting and colouring survival plots | availableSurvivalGrouping |
| Estimate cumulative incidence with a competing outcome | estimateCompetingRiskSurvival |
| Estimate survival for a single event of interest | estimateSingleEventSurvival |
| Create mock CDM reference with survival::mgus2 dataset | mockMGUS2cdm |
| Additional arguments for the function tableSurvival() | optionsTableSurvival |
| Plot survival or cumulative incidence results | plotSurvival |
| Table with survival events | riskTable |
| Table with survival summary | tableSurvival |
| Display the attrition of a survival result in a visual table | tableSurvivalAttrition |
| Table with survival events | tableSurvivalEvents |
