Package: CohortConstructor 0.3.5

CohortConstructor: Build and Manipulate Study Cohorts Using a Common Data Model
Create and manipulate study cohorts in data mapped to the Observational Medical Outcomes Partnership Common Data Model.
Authors:
CohortConstructor_0.3.5.tar.gz
CohortConstructor_0.3.5.tar.gz(r-4.5-noble)CohortConstructor_0.3.5.tar.gz(r-4.4-noble)
CohortConstructor_0.3.5.tgz(r-4.4-emscripten)CohortConstructor_0.3.5.tgz(r-4.3-emscripten)
CohortConstructor.pdf |CohortConstructor.html✨
CohortConstructor/json (API)
# Install 'CohortConstructor' in R: |
install.packages('CohortConstructor', repos = 'https://cloud.r-project.org') |
Bug tracker:https://github.com/ohdsi/cohortconstructor/issues
Pkgdown site:https://ohdsi.github.io
- benchmarkData - Benchmarking results
Last updated 1 months agofrom:a17ff9e8a9. Checks:3 OK. Indexed: no.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 18 2025 |
R-4.5-linux | OK | Mar 18 2025 |
R-4.4-linux | OK | Mar 18 2025 |
Exports:addCohortTableIndexattritionbenchmarkCohortConstructorbindcohortCodelistcohortCountcollapseCohortsconceptCohortcopyCohortsdemographicsCohortendDateColumnentryAtFirstDateentryAtLastDateexitAtDeathexitAtFirstDateexitAtLastDateexitAtObservationEndintersectCohortsmatchCohortsmeasurementCohortmockCohortConstructorpadCohortDatepadCohortEndpadCohortStartrequireAgerequireCohortIntersectrequireConceptIntersectrequireDeathFlagrequireDemographicsrequireFutureObservationrequireInDateRangerequireIsEntryrequireIsFirstEntryrequireIsLastEntryrequireMinCohortCountrequirePriorObservationrequireSexrequireTableIntersectsampleCohortssettingsstartDateColumnstratifyCohortssubsetCohortstableNametrimDemographicstrimToDateRangeunionCohortsyearCohorts
Dependencies:backportsbitbit64blobCDMConnectorcheckmateclicliprclockcpp11crayonDBIdbplyrdplyrfansigenericsgluehmsjsonlitelifecyclemagrittromopgenericsPatientProfilespillarpkgconfigprettyunitsprogresspurrrR6readrrlangsnakecasestringistringrtibbletidyrtidyselecttzdbutf8vctrsvroomwithr
Introduction
Rendered froma00_introduction.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2024-11-11
Started: 2024-06-02
Building base cohorts
Rendered froma01_building_base_cohorts.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2025-01-17
Started: 2024-06-02
Applying cohort table requirements
Rendered froma02_cohort_table_requirements.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2025-01-17
Started: 2024-09-25
Applying demographic requirements to a cohort
Rendered froma03_require_demographics.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2025-01-17
Started: 2024-09-25
Applying requirements related to other cohorts, concept sets, or tables
Rendered froma04_require_intersections.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2025-01-17
Started: 2024-09-25
Updating cohort start and end dates
Rendered froma05_update_cohort_start_end.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2024-11-11
Started: 2024-09-25
Concatenating cohort records
Rendered froma06_concatanate_cohorts.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2025-02-16
Started: 2024-09-25
Filtering cohorts
Rendered froma07_filter_cohorts.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2025-01-17
Started: 2024-09-25
Splitting cohorts
Rendered froma08_split_cohorts.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2025-02-16
Started: 2024-09-25
Combining Cohorts
Rendered froma09_combine_cohorts.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2025-02-16
Started: 2024-09-25
CohortConstructor benchmarking results
Rendered froma11_benchmark.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2025-02-16
Started: 2024-09-25
Generating a matched cohort
Rendered froma10_match_cohorts.Rmd
usingknitr::rmarkdown
on Mar 18 2025.Last update: 2025-01-17
Started: 2024-09-25
Citation
To cite package ‘CohortConstructor’ in publications use:
Burn E, Catala M, Mercade-Besora N, Alcalde-Herraiz M, Du M, Guo Y, Chen X, Lopez-Guell K, Rowlands E (2025). CohortConstructor: Build and Manipulate Study Cohorts Using a Common Data Model. R package version 0.3.5, https://CRAN.R-project.org/package=CohortConstructor.
Corresponding BibTeX entry:
@Manual{, title = {CohortConstructor: Build and Manipulate Study Cohorts Using a Common Data Model}, author = {Edward Burn and Marti Catala and Nuria Mercade-Besora and Marta Alcalde-Herraiz and Mike Du and Yuchen Guo and Xihang Chen and Kim Lopez-Guell and Elin Rowlands}, year = {2025}, note = {R package version 0.3.5}, url = {https://CRAN.R-project.org/package=CohortConstructor}, }