Package: CoDaLoMic 0.1.0
Irene Creus Martí
CoDaLoMic: Compositional Models to Longitudinal Microbiome Data
Implementation of models to analyse compositional microbiome time series taking into account the interaction between groups of bacteria. The models implemented are described in Creus-Martí et al (2018, ISBN:978-84-09-07541-6), Creus-Martí et al (2021) <doi:10.1155/2021/9951817> and Creus-Martí et al (2022) <doi:10.1155/2022/4907527>.
Authors:
CoDaLoMic_0.1.0.tar.gz
CoDaLoMic_0.1.0.tar.gz(r-4.5-noble)CoDaLoMic_0.1.0.tar.gz(r-4.4-noble)
CoDaLoMic_0.1.0.tgz(r-4.4-emscripten)CoDaLoMic_0.1.0.tgz(r-4.3-emscripten)
CoDaLoMic.pdf |CoDaLoMic.html✨
CoDaLoMic/json (API)
| # Install 'CoDaLoMic' in R: |
| install.packages('CoDaLoMic', repos = 'https://cloud.r-project.org') |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:0f9dc71314. Checks:3 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 26 2025 |
| R-4.5-linux | OK | Mar 26 2025 |
| R-4.4-linux | OK | Mar 26 2025 |
Exports:B1MODImatrizPB1MODImodelBalanceBPBM_MatrixEstimate_Param_EstParmFuncEstimate_Param_FBMEstimating_BPBMEstParmFuncEstParmFunc_FBMExpectedValue_EstParmFuncExpectedValues_EstParmFunc_FBMExpectedValuess_BPBMFromVectorToMatrix_BPBMFVectorPBmodeloPrediGraphicsGraphicsPredictionGraphicsPredictionBPBMGraphicsSPBalLogVeroFuncBUENAMaxBacteriaMaxBacteriaPredObtainigValuePBObtainigValueSPBalObtainingDICPBalancePBalancePrediPBmodelPCAbiplotPercen_VariancePlotDendogramPredictionBPBMPredictionEstParmFuncPredictionFBMPreparingTheDataQualityControlridgeregressionrxnrateStudyingParamTable_alr_Dirich_glvTableBPBMTableFBMTauAndParameters_EstParmFunc_FBMvecttorZeroData
Dependencies:abindbackportsbayesmbootbroomclicodacolorspacecompositionscpp11DEoptimRdplyrfansifarvergenericsggbiplotggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellNADAnlmepillarpkgconfigplyrpurrrR2jagsR2WinBUGSR6RColorBrewerRcppRcppArmadilloreshape2rjagsrlangrobustbasescalesstringistringrsurvivaltensorAtibbletidyrtidyselecttruncnormutf8vctrsviridisLitewithrxtablezCompositions
Citation
To cite package ‘CoDaLoMic’ in publications use:
Creus Martí I (2025). CoDaLoMic: Compositional Models to Longitudinal Microbiome Data. R package version 0.1.0, https://CRAN.R-project.org/package=CoDaLoMic.
Corresponding BibTeX entry:
@Manual{,
title = {CoDaLoMic: Compositional Models to Longitudinal Microbiome
Data},
author = {Irene {Creus Martí}},
year = {2025},
note = {R package version 0.1.0},
url = {https://CRAN.R-project.org/package=CoDaLoMic},
}