Package: CloneSeeker 1.0.11

Kevin R. Coombes

CloneSeeker: Seeking and Finding Clones in Copy Number and Sequencing Data

Defines the classes and functions used to simulate and to analyze data sets describing copy number variants and, optionally, sequencing mutations in order to detect clonal subsets. See Zucker et al. (2019) <doi:10.1093/bioinformatics/btz057>.

Authors:Kevin R. Coombes, Mark Zucker

CloneSeeker_1.0.11.tar.gz
CloneSeeker_1.0.11.tar.gz(r-4.5-noble)CloneSeeker_1.0.11.tar.gz(r-4.4-noble)
CloneSeeker_1.0.11.tgz(r-4.4-emscripten)CloneSeeker_1.0.11.tgz(r-4.3-emscripten)
CloneSeeker.pdf |CloneSeeker.html✨
CloneSeeker/json (API)

Peer review:

Bug tracker:https://r-forge.r-project.org/projects/oompa

11 exports 0.00 score 76 dependencies 202 downloads

Last updated 2 years agofrom:10e984dc8d

Exports:dataGengenerateSimplexgenerateTumorDatagetCloneplotTumorDatarunAlgsampleSimplexseekClonesTumortumorGenWeightVector

Dependencies:abindbackportsbootbroomcarcarDataclicolorspacecombinatcorrplotcowplotcpp11curlDerivdoBydplyrfansifarvergenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtableisobandjsonlitelabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmc2dmgcvmicrobenchmarkminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpolynompurrrquantmodquantregR6RColorBrewerRcppRcppEigenrlangrstatixscalesSparseMstringistringrsurvivaltibbletidyrtidyselectTTRutf8vctrsviridisLitewithrxtszoo