Package: Cleanet 1.0.0
Matei Ionita
Cleanet: Automated Doublet Detection and Classification for Cytometry Data
Automated method for doublet detection in flow or mass cytometry data, based on simulating doublets and finding events whose protein expression patterns are similar to the simulated doublets.
Authors:
Cleanet_1.0.0.tar.gz
Cleanet_1.0.0.tar.gz(r-4.5-noble)Cleanet_1.0.0.tar.gz(r-4.4-noble)
Cleanet_1.0.0.tgz(r-4.4-emscripten)Cleanet_1.0.0.tgz(r-4.3-emscripten)
Cleanet.pdf |Cleanet.html✨
Cleanet/json (API)
| # Install 'Cleanet' in R: |
| install.packages('Cleanet', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 27 days agofrom:62811c77df. Checks:2 OK. Indexed: no.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Dec 19 2024 |
| R-4.5-linux-x86_64 | OK | Dec 19 2024 |
Exports:classify_doubletscleanetcompare_doublets_exp_obsfilter_debris_cytoffilter_debris_flow
Dependencies:bitbit64clicliprcolorspacecpp11crayondplyrfansifarvergenericsggplot2gluegtablehmsisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrprettyunitsprogresspurrrR6RColorBrewerRcppRcppArmadilloRcppHNSWreadrreshape2rlangscalesstringistringrtibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Classify doublets (or multiplets) based on component singlets. | classify_doublets |
| Detect doublets in a single cytometry sample | cleanet |
| Tabulate expected and observed proportions of doublet types. | compare_doublets_exp_obs |
| Flag debris in mass cytometry data. | filter_debris_cytof |
| Flag debris in flow cytometry data. | filter_debris_flow |
