Package: CalibratR 0.1.2
Dominik Heider
CalibratR: Mapping ML Scores to Calibrated Predictions
Transforms your uncalibrated Machine Learning scores to well-calibrated prediction estimates that can be interpreted as probability estimates. The implemented BBQ (Bayes Binning in Quantiles) model is taken from Naeini (2015, ISBN:0-262-51129-0). Please cite this paper: Schwarz J and Heider D, Bioinformatics 2019, 35(14):2458-2465.
Authors:
CalibratR_0.1.2.tar.gz
CalibratR_0.1.2.tar.gz(r-4.5-noble)CalibratR_0.1.2.tar.gz(r-4.4-noble)
CalibratR_0.1.2.tgz(r-4.4-emscripten)CalibratR_0.1.2.tgz(r-4.3-emscripten)
CalibratR.pdf |CalibratR.html✨
CalibratR/json (API)
| # Install 'CalibratR' in R: |
| install.packages('CalibratR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- example - Example
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 years agofrom:5862b386b5. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 22 2024 |
| R-4.5-linux | OK | Aug 22 2024 |
Exports:build_GUESScalibrategetECEgetMCEpredict_calibratRpredict_GUESSreliability_diagrammstatistics_calibratRvisualize_calibratR
Dependencies:clicodetoolscolorspacedoParallelfansifarverfitdistrplusforeachggplot2gluegtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrpROCR6RColorBrewerRcppreshape2rlangscalesstringistringrsurvivaltibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BBQ_CV | BBQ_CV |
| binom_for_histogram | binom_for_histogram |
| build_BBQ | build_BBQ |
| build_GUESS | build_GUESS |
| build_hist_binning | build_hist_binning |
| calibrate | calibrate |
| calibrate_me | calibrate_me |
| calibrate_me_CV_errors | calibrate_me_CV_errors |
| compare_models_visual | compare_models_visual |
| evaluate_discrimination | evaluate_discrimination |
| example | example |
| format_values | format_values |
| get_Brier_score | get_Brier_score |
| get_CLE_class | get_CLE_class |
| get_CLE_comparison | get_CLE_comparison |
| get_ECE_equal_width | get_ECE_equal_width |
| get_MCE_equal_width | get_MCE_equal_width |
| getECE | getECE |
| getMCE | getMCE |
| getRMSE | getRMSE |
| GUESS_CV | GUESS_CV |
| hist_binning_CV | hist_binning_CV |
| plot_class_distributions | plot_class_distributions |
| plot_model | plot_model |
| predict_BBQ | predict_BBQ |
| predict_calibratR | predict_calibratR |
| predict_GUESS | predict_GUESS |
| predict_hist_binning | predict_hist_binning |
| predict_model | predict_model |
| rd_multiple_runs | rd_multiple_runs |
| reliability_diagramm | reliability_diagramm |
| scale_me | scale_me |
| statistics_calibratR | statistics_calibratR |
| transform_me | transform_me |
| uncalibrated_CV | uncalibrated_CV |
| visualize_calibrated_test_set | visualize_calibrated_test_set |
| visualize_calibratR | visualize_calibratR |
| visualize_distribution | visualize_distribution |
| visualize_error_boxplot | visualize_error_boxplot |