Package: CDMConnector 1.7.0
CDMConnector: Connect to an OMOP Common Data Model
Provides tools for working with observational health data in the Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax. Common data model database table references are stored in a single compound object along with metadata.
Authors:
CDMConnector_1.7.0.tar.gz
CDMConnector_1.7.0.tar.gz(r-4.5-noble)CDMConnector_1.7.0.tar.gz(r-4.4-noble)
CDMConnector_1.7.0.tgz(r-4.4-emscripten)CDMConnector_1.7.0.tgz(r-4.3-emscripten)
CDMConnector.pdf |CDMConnector.html✨
CDMConnector/json (API)
NEWS
# Install 'CDMConnector' in R: |
install.packages('CDMConnector', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/darwin-eu/cdmconnector/issues
Pkgdown site:https://darwin-eu.github.io
Last updated 6 days agofrom:aae82fd807. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 19 2024 |
R-4.5-linux | OK | Dec 19 2024 |
Exports:%>%append_permanentappendPermanentas_dateasDateassert_tablesassert_write_schemaassertTablesassertWriteSchemaattritionbenchmarkCDMConnectorbindcdm_disconnectcdm_flattencdm_from_concdm_from_environmentcdm_from_filescdm_from_tablescdm_namecdm_samplecdm_select_tblcdm_subsetcdm_subset_cohortcdmConcdmDisconnectcdmFlattencdmFromConcdmFromEnvironmentcdmFromFilescdmFromTablescdmNamecdmSamplecdmSelectcdmSelectTblcdmSubsetcdmSubsetCohortcdmVersioncdmWriteSchemacohort_attritioncohort_countcohort_erafycohort_setcohort_unioncohortAttritioncohortCodelistcohortCountcohortErafycohortSetcohortUnioncomputecompute_querycomputeQuerycopy_cdm_tocopyCdmTodateadddatediffdatepartdbmsdbSourcedownload_eunomia_datadownloadEunomiaDatadropSourceTabledropTableeunomia_direunomia_is_availableeunomiaDireunomiaIsAvailableexample_datasetsexampleDatasetsgenerate_cohort_setgenerate_concept_cohort_setgenerateCohortSetgenerateConceptCohortSetin_schemainSchemainsertTableintersect_cohortsintersectCohortslist_tableslistSourceTableslistTablesnew_generated_cohort_setnewCohortTablenewGeneratedCohortSetread_cohort_setreadCohortSetreadSourceTablerecord_cohort_attritionrecordCohortAttritionrequire_eunomiarequireEunomiasettingssnapshotstowsummarise_quantilesummariseQuantilesummarize_quantilesummarizeQuantiletbl_grouptblGroupunion_cohortsunionCohortsunique_table_nameuniqueTableNamevalidate_cdmvalidateCdmversion
Dependencies:backportsbitbit64blobcheckmateclicliprcpp11crayonDBIdbplyrdplyrfansigenericsgluehmsjsonlitelifecyclemagrittromopgenericspillarpkgconfigprettyunitsprogresspurrrR6readrrlangsnakecasestringistringrtibbletidyrtidyselecttzdbutf8vctrsvroomwithr
CDM reference backends
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usingknitr::rmarkdown
on Dec 19 2024.Last update: 2024-02-06
Started: 2023-03-09
CDMConnector and dbplyr
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usingknitr::rmarkdown
on Dec 19 2024.Last update: 2024-04-03
Started: 2023-03-09
DBI connection examples
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usingknitr::rmarkdown
on Dec 19 2024.Last update: 2024-12-19
Started: 2023-03-09
Getting Started
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usingknitr::rmarkdown
on Dec 19 2024.Last update: 2024-11-13
Started: 2023-03-09
Using CDM attributes
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usingknitr::rmarkdown
on Dec 19 2024.Last update: 2024-05-04
Started: 2023-08-17
Working with cohorts
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usingknitr::rmarkdown
on Dec 19 2024.Last update: 2024-11-13
Started: 2024-02-06