Package: CB2 1.3.4
Hyun-Hwan Jeong
CB2: CRISPR Pooled Screen Analysis using Beta-Binomial Test
Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis. Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>.
Authors:
CB2_1.3.4.tar.gz
CB2_1.3.4.tar.gz(r-4.5-noble)CB2_1.3.4.tar.gz(r-4.4-noble)
CB2_1.3.4.tgz(r-4.4-emscripten)CB2_1.3.4.tgz(r-4.3-emscripten)
CB2.pdf |CB2.html✨
CB2/json (API)
# Install 'CB2' in R: |
install.packages('CB2', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- Evers_CRISPRn_RT112 - A benchmark CRISPRn pooled screen data from Evers et al.
- Sanson_CRISPRn_A375 - A benchmark CRISPRn pooled screen data from Sanson et al.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:b32975d586. Checks:OK: 1 NOTE: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 28 2024 |
R-4.5-linux-x86_64 | NOTE | Oct 28 2024 |
Exports:calc_mappabilityfit_abget_CPMjoin_count_and_designmeasure_gene_statsmeasure_sgrna_statsplot_corr_heatmapplot_count_distributionplot_dotplotplot_PCAquantrun_estimationrun_sgrna_quant
Dependencies:BiobaseBiocGenericsbitbit64clicliprcodetoolscolorspacecpp11crayonDEoptimRdplyrfansifarvergenericsggplot2gluegtablehmsisobandlabelinglatticelifecyclemagrittrMASSmathjaxrMatrixMatrixModelsmetapmgcvmnormtmultcompmulttestmunsellmutossmvtnormnlmenumDerivpheatmappillarpkgconfigplotrixprettyunitsprogresspurrrqqconfquantregR.methodsS3R.ooR.utilsR6rbibutilsRColorBrewerRcppRcppArmadilloRdpackreadrrlangrobustbasesandwichscalessnSparseMstringistringrsurvivalTFisherTH.datatibbletidyrtidyselecttzdbutf8vctrsviridisLitevroomwithrzoo