Package: CAbiplot 0.1.0
Prakash Kumar
CAbiplot: Correspondence Analysis Biplots and Diagnostic Reports
A convenience wrapper around 'FactoMineR' and 'factoextra' for running Correspondence Analysis (CA) on a numeric data table (e.g. a genotype-by-trait or contingency-style matrix) and producing a full set of publication-ready diagnostic plots: scree plot, symmetric biplot, row-only and column-only plots, row/column contribution plots, and row/column cos2 (quality-of-representation) plots. A single top-level function runs the whole pipeline, prints formatted result tables, and optionally saves every plot as a high-resolution image, mirroring a typical CA reporting workflow used in agronomy and plant-breeding studies. An example genotype-by-trait data set is included.
Authors:
CAbiplot_0.1.0.tar.gz
CAbiplot_0.1.0.zip(r-4.7-any)CAbiplot_0.1.0.zip(r-4.6-any)
CAbiplot_0.1.0.tar.gz(r-4.7-any)CAbiplot_0.1.0.tar.gz(r-4.6-any)
CAbiplot_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
CAbiplot/json (API)
| # Install 'CAbiplot' in R: |
| install.packages('CAbiplot', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:2f8a8b0c8e. Checks:6 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 159 | ||
| source / vignettes | OK | 260 | ||
| linux-release | OK | 166 | ||
| windows-devel | OK | 146 | ||
| windows-release | OK | 99 | ||
| wasm-release | OK | 149 |
Exports:ca_biplotca_col_plotca_contrib_plotca_cos2_plotca_reportca_row_plotca_scree_plotget_genotype_traitsread_ca_datarun_ca
Dependencies:abindbackportsbase64encbootbroombslibcachemcarcarDatacliclustercolorspacecorrplotcowplotcpp11crosstalkdendextendDerivdigestdoBydplyrDTellipseemmeansestimabilityevaluatefactoextraFactoMineRfarverfastmapflashClustfontawesomeforecastFormulafracdifffsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetsirlbaisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevalleapslifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmemoisemgcvmimeminqamodelrmultcompViewmvtnormnlmenloptrnnetnumDerivotelpbkrtestpillarpkgconfigpolynompromisespurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangrmarkdownrstatixS7sassscalesscatterplot3dshowtextshowtextdbSparseMstringistringrsurvivalsysfontstibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisviridisLitewithrxfunyamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Symmetric CA biplot (rows and columns) | ca_biplot |
| CA column-only plot | ca_col_plot |
| Row or column contribution plot | ca_contrib_plot |
| Row or column cos2 (quality of representation) plot | ca_cos2_plot |
| Run a full Correspondence Analysis report | ca_report |
| CA row-only plot | ca_row_plot |
| Scree plot of CA eigenvalues | ca_scree_plot |
| Load the bundled example genotype-by-trait data set | get_genotype_traits |
| Read a CA-ready numeric data table | read_ca_data |
| Run Correspondence Analysis on a numeric data table | run_ca |