Package: BoundaryStats 2.2.0

Amy Luo

BoundaryStats: Boundary Overlap Statistics

Analysis workflow for finding geographic boundaries of ecological or landscape traits and comparing the placement of geographic boundaries of two traits. If data are trait values, trait data are transformed to boundary intensities based on approximate first derivatives across latitude and longitude. The package includes functions to create custom null models based on the input data. The boundary statistics are described in: Fortin, Drapeau, and Jacquez (1996) <doi:10.2307/3545584>.

Authors:Amy Luo [aut, cre, cph], Elizabeth Derryberry [ths]

BoundaryStats_2.2.0.tar.gz
BoundaryStats_2.2.0.tar.gz(r-4.5-noble)BoundaryStats_2.2.0.tar.gz(r-4.4-noble)
BoundaryStats_2.2.0.tgz(r-4.4-emscripten)BoundaryStats_2.2.0.tgz(r-4.3-emscripten)
BoundaryStats.pdf |BoundaryStats.html
BoundaryStats/json (API)
NEWS

# Install 'BoundaryStats' in R:
install.packages('BoundaryStats', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.70 score 3 scripts 210 downloads 15 exports 50 dependencies

Last updated 2 months agofrom:9bf08c032a. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 24 2024
R-4.5-linuxOKDec 24 2024

Exports:boundary_null_distribcategorical_boundarydefine_boundarygauss_random_field_simlisa_clustersmax_subgraphmod_random_clust_simn_subgraphOdirectoverlap_null_distribOxOxyplot_boundaryrandom_raster_simsobel_operator

Dependencies:classclassIntclicolorspacecpp11DBIdotCall64dplyre1071fansifarverfieldsgenericsggplot2gluegtableigraphisobandKernSmoothlabelinglatticelifecyclemagrittrmapsMASSMatrixmgcvmunsellnlmepdqrpillarpkgconfigproxyR6RColorBrewerRcpprlangs2scalessfspamterratibbletidyselectunitsutf8vctrsviridisLitewithrwk

BoundaryStats Analysis Workflow

Rendered fromBoundaryStats.Rmdusingknitr::rmarkdownon Dec 24 2024.

Last update: 2023-10-21
Started: 2023-06-28

Readme and manuals

Help Manual

Help pageTopics
Afrixalus delicatus genetic groups projectionA.delicatus_crs
Afrixalus delicatus genetic groups extentA.delicatus_ext
Afrixalus delicatus genetic groupsA.delicatus_matrix
Afrixalus sylvaticus genetic groups projectionA.sylvaticus_crs
Afrixalus sylvaticus genetic groups extentA.sylvaticus_ext
Afrixalus sylvaticus genetic groupsA.sylvaticus_matrix
Null distribution for overlap statisticsboundary_null_distrib
Define the boundary elements of a SpatRaster with categorical datacategorical_boundary
Define the boundary elements of a SpatRaster with numeric data or boundary intensitiesdefine_boundary
Ecoregion data for East Africa projectionecoregions_crs
Ecoregion data for East Africa extentecoregions_ext
Ecoregion data for East Africaecoregions_matrix
Gaussian random field neutral modelgauss_random_field_sim
Grassland land cover projectiongrassland_crs
Grassland land cover extentgrassland_ext
Grassland land covergrassland_matrix
Leptopelis concolor genetic groups projectionL.concolor_crs
Leptopelis concolor genetic groups extentL.concolor_ext
Leptopelis concolor genetic groupsL.concolor_matrix
Leptopelis flavomaculatus genetic groups projectionL.flavomaculatus_crs
Leptopelis flavomaculatus genetic groups extentL.flavomaculatus_ext
Leptopelis flavomaculatus genetic groupsL.flavomaculatus_matrix
Identify LISA clusterslisa_clusters
Length of the longest subgraphmax_subgraph
Modified random cluster neutral landscape modelmod_random_clust_sim
Number of subgraphsn_subgraph
Direct overlap between boundary elements.Odirect
Null distribution for boundary overlap statisticsoverlap_null_distrib
Average minimum distance from x boundary elements to nearest y boundary element.Ox
Average minimum distance between boundary elements of two variablesOxy
Map the boundary elements of two raster layersplot_boundary
Stochastic neutral landscape modelrandom_raster_sim
Sobel-Feldman operator for edge detectionsobel_operator
Triturus cristatus genetic groups projectionT.cristatus_crs
Triturus cristatus genetic groups extentT.cristatus_ext
Triturus cristatus genetic groupsT.cristatus_matrix