Package: BisRNA 0.2.2

Carine Legrand

BisRNA: Analysis of RNA Cytosine-5 Methylation

Bisulfite-treated RNA non-conversion in a set of samples is analysed as follows : each sample's non-conversion distribution is identified to a Poisson distribution. P-values adjusted for multiple testing are calculated in each sample. Combined non-conversion P-values and standard errors are calculated on the intersection of the set of samples. For further details, see C Legrand, F Tuorto, M Hartmann, R Liebers, D Jakob, M Helm and F Lyko (2017) <doi:10.1101/gr.210666.116>.

Authors:C Legrand

BisRNA_0.2.2.tar.gz
BisRNA_0.2.2.tar.gz(r-4.7-any)BisRNA_0.2.2.tar.gz(r-4.6-any)
BisRNA_0.2.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BisRNA/json (API)

# Install 'BisRNA' in R:
install.packages('BisRNA', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • Bisdata1 - Synthetic sample 1 of RNA bisulfite sequencing
  • Bisdata2 - Synthetic sample 2 of RNA bisulfite sequencing
  • Bisdata3 - Synthetic sample 3 of RNA bisulfite sequencing

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.32 score 21 scripts 123 downloads 1 mentions 6 exports 1 dependencies

Last updated from:37e5fae7c3. Checks:4 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK107
source / vignettesOK158
linux-release-x86_64OK103
wasm-releaseOK98

Exports:class.BisXPfisher.methodread.BisXPRNAmeth.poisson.parRNAmeth.poisson.testsamples.combine

Dependencies:MASS