Purpose | Resources Needed | Steps
This package is considered a duplicate. The official version of this package is found at:https://leppott.r-universe.dev/BioMonTools
Package: BioMonTools 1.3.1
Erik W. Leppo
BioMonTools: Biomonitoring and Bioassessment Calculations
An aid for manipulating data associated with biomonitoring and bioassessment. Calculations include metric calculation, marking of excluded taxa, subsampling, and multimetric index calculation. Targeted communities are benthic macroinvertebrates, fish, periphyton, and coral. As described in the Revised Rapid Bioassessment Protocols (Barbour et al. 1999) <https://archive.epa.gov/water/archive/web/html/index-14.html>.
Authors:
BioMonTools_1.3.1.tar.gz
BioMonTools_1.3.1.zip(r-4.7-any)
BioMonTools_1.3.1.tar.gz(r-4.7-any)BioMonTools_1.3.1.tar.gz(r-4.6-any)
BioMonTools_1.3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
BioMonTools/json (API)
| # Install 'BioMonTools' in R: |
| install.packages('BioMonTools', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/leppott/biomontools/issues
Datasets:
- data_algae_names_official - Algae Taxa Names, Official
- data_algae_names_user - Algae Taxa Names, User
- data_benthos_MBSS - Benthic macroinvertebrate taxa data; MBSS
- data_benthos_PacNW - Benthic macroinvertebrate taxa data; Pacific Northwest
- data_bio2rarify - Rarify example data
- data_coral_bcg_metric_dev - Coral taxa data; Florida BCG.
- data_coral_bcg_metric_qc - Coral metric value data; Florida BCG.
- data_diatom_mmi_dev - Diatom taxa data; Indiana DEM
- data_diatom_mmi_qc - Diatom metric value data; Indiana DEM
- data_fish_MBSS - Fish data, MBSS
- data_metval_scmb_ibi - Data_metval_scmb_ibi
- data_mmi_dev - Metric data for metric stats for mmi development
- data_mmi_dev_small - Metric data for metric stats for mmi development
- data_Taxa_MA - Estuary taxa data
- data_taxa_names_issues - Taxa name data frame with issues
- TaxaMaster_Ben_BCG_PacNW - TaxaMaster_Ben_BCG_PacNW
Last updated from:8869b8d544. Checks:5 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 225 | ||
| source / vignettes | OK | 222 | ||
| linux-release-x86_64 | OK | 208 | ||
| windows-devel-x86_64 | OK | 189 | ||
| wasm-release | OK | 132 |
Exports:assign_IndexClassMapTaxaObsmarkExcludedmetric.scoresmetric.statsmetric.stats2metric.valuesmetric.values.algaemetric.values.bugsmetric.values.coralmetric.values.fishmetvalgrpxlqc_taxaqc_taxa_match_officialqc_taxa_names_proofqc_taxa_phyloqc_taxa_values_characterqc_taxa_values_logicalqc_taxa_values_numericqc.checksrarifytaxa_translate
Dependencies:clicpp11dplyrgenericsgluelifecyclemagrittrmapspillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr
Vignette, Adding a New Index
Last update: 2026-07-22
Started: 2025-10-09
Vignette, BioMonTools
Purpose | Installation | Help | Package Functions | metric.values | Data Preparation | markExcluded | rarify | Flags
Last update: 2026-07-22
Started: 2025-10-09
Taxa Maps
Purpose | Usage | Example, Data | Example, ggplot | Example, PDF
Last update: 2025-10-09
Started: 2025-10-09
