Package: BinaryDosage 2.0.0

John Morrison

BinaryDosage: Creates, Merges, and Reads Binary Dosage Files

Tools to create binary dosage files from either VCF or GEN files, merge binary dosage files, and read binary dosage files. Binary dosage files tend to have quicker read times than VCF and GEN formats. There is a small increase in size compared to compressed VCF and GEN files.

Authors:John Morrison [aut, cre], NCI [fnd], NCI [fnd], NIEHS [fnd], NHLBI [fnd]

BinaryDosage_2.0.0.tar.gz
BinaryDosage_2.0.0.tar.gz(r-4.7-arm64)BinaryDosage_2.0.0.tar.gz(r-4.7-x86_64)BinaryDosage_2.0.0.tar.gz(r-4.6-arm64)BinaryDosage_2.0.0.tar.gz(r-4.6-x86_64)
BinaryDosage_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BinaryDosage/json (API)
NEWS

# Install 'BinaryDosage' in R:
install.packages('BinaryDosage', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

zlibcpp

4.22 score 1 packages 540 downloads 22 exports 37 dependencies

Last updated from:40f112c2b3. Checks:6 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK154
linux-devel-x86_64OK153
source / vignettesOK216
linux-release-arm64OK156
linux-release-x86_64OK160
wasm-releaseOK130

Exports:bdapplybdmergeclosebd5congenapplygentobdgetaafgetbd5snpgetbd5snp_bufgetbd5snp_congetbdinfogetgeninfogetmafgetrsqgetsnpgetvcfinfomergebdopenbd5consubsetbdupdatebdvcfapplyvcftobdvcftobdlegacy

Dependencies:clicodetoolscpp11data.tablediagramdigestfarverfuturefuture.applyggplot2globalsgluegtableisobandKernSmoothlabelinglatticelavalifecyclelistenvMatrixnumDerivparallellyprodlimprogressrR6RColorBrewerRcpprlangS7scalesshapeSQUAREMsurvivalvctrsviridisLitewithr

Binary Dosage Formats

Rendered frombdformats.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-04-29
Started: 2020-01-13

Estimating Imputed R-squares

Rendered fromr2estimates.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-04-29
Started: 2020-01-13

Genetic File Information

Rendered fromgeneticfileinfo.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-04-29
Started: 2020-01-13

Legacy Binary Dosage Formats (Formats 1-4)

Rendered fromlegacy.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-04-29
Started: 2026-04-29

Merging Files

Rendered frommergingfiles.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-04-29
Started: 2020-01-13

Merging Format 5 Binary Dosage Files

Rendered frommergingbd5files.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-04-29
Started: 2026-04-29

Reading SNPs from Format 5 Files

Rendered frombd5snpreaders.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-04-29
Started: 2026-04-29

Using Binary Dosage files

Rendered fromusingbdfiles.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-04-29
Started: 2020-01-13

Using Format 5 Binary Dosage Files

Rendered fromusingformat5files.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-04-29
Started: 2026-04-29

Using GEN Files

Rendered fromusinggenfiles.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-04-29
Started: 2020-01-13

Using VCF files

Rendered fromusingvcffiles.Rmdusingknitr::rmarkdownon Jun 05 2026.

Last update: 2026-04-29
Started: 2020-01-13