| Subset an HDF5Matrix | [.HDF5Matrix |
| Subsetting assignment for HDF5Matrix objects | [<-.HDF5Matrix |
| Matrix multiplication for HDF5Matrix | %*% |
| Apply a statistical or algebraic function to HDF5 datasets (generic) | apply_function |
| Convert HDF5Matrix to data.frame | as.data.frame.HDF5Matrix |
| Convert HDF5Matrix to in-memory matrix | as.matrix.HDF5Matrix |
| Weighted matrix–vector products and cross-products | bd_wproduct |
| Apply function to different datasets inside a group | bdapply_Function_hdf5 |
| Block-Based Matrix Multiplication | bdblockMult |
| Block-Based Matrix Subtraction | bdblockSubstract |
| Block-Based Matrix Addition | bdblockSum |
| Compute correlation matrix for in-memory matrices (unified function) | bdCorr_matrix |
| Create Group in an HDF5 File | bdCreate_hdf5_group |
| Create HDF5 data file and write data to it | bdCreate_hdf5_matrix |
| Efficient Matrix Cross-Product Computation | bdCrossprod |
| List Datasets in HDF5 Group | bdgetDatasetsList_hdf5 |
| Import data from URL or file to HDF5 format | bdImportData_hdf5 |
| Import Text File to HDF5 | bdImportTextFile_hdf5 |
| Move HDF5 Dataset | bdmove_hdf5_dataset |
| Compute Matrix Pseudoinverse (In-Memory) | bdpseudoinv |
| Compute Matrix Pseudoinverse (HDF5-Stored) | bdpseudoinv_hdf5 |
| Reduce Multiple HDF5 Datasets | bdReduce_hdf5_dataset |
| Matrix–scalar weighted product | bdScalarwproduct |
| Efficient Matrix Transposed Cross-Product Computation | bdtCrossprod |
| Write dimnames to an HDF5 dataset | bdWrite_hdf5_dimnames |
| BigDataStatMeth: Scalable statistical computing with R, C++, and HDF5 | BigDataStatMeth |
| Check if memory allocation is safe | can_allocate |
| Cancer classification | cancer |
| Column-bind HDF5Matrix objects | cbind.HDF5Matrix |
| Cholesky decomposition of a symmetric positive-definite HDF5Matrix | chol.HDF5Matrix |
| Close HDF5Matrix | close.HDF5Matrix |
| Dataset colesterol | colesterol |
| Column and row maximums for HDF5Matrix | colMaxs colMaxs.HDF5Matrix rowMaxs rowMaxs.HDF5Matrix |
| Column and row means for HDF5Matrix | colMeans colMeans.HDF5Matrix rowMeans rowMeans.HDF5Matrix |
| Column and row minimums for HDF5Matrix | colMins colMins.HDF5Matrix rowMins rowMins.HDF5Matrix |
| Column and row standard deviations for HDF5Matrix | colSds colSds.HDF5Matrix rowSds rowSds.HDF5Matrix |
| Column and row sums for HDF5Matrix | colSums colSums.HDF5Matrix rowSums rowSums.HDF5Matrix |
| Column and row variances for HDF5Matrix | colVars colVars.HDF5Matrix rowVars rowVars.HDF5Matrix |
| Correlation (generic) | cor |
| Correlation matrix for HDF5Matrix objects | cor.HDF5Matrix |
| Cross product of HDF5Matrix objects | crossprod crossprod.HDF5Matrix |
| Extract or construct a diagonal for HDF5Matrix | diag diag.default diag.HDF5Matrix |
| Diagonal-vector operation on an HDF5Matrix | diag_op diag_op.HDF5Matrix |
| Scalar diagonal operation on an HDF5Matrix | diag_scale diag_scale.HDF5Matrix |
| Set diagonal of an HDF5Matrix (generic) | diag<- |
| Dimensions of an HDF5Matrix | dim.HDF5Matrix |
| Get dimension names of an HDF5Matrix | colnames.HDF5Matrix colnames<-.HDF5Matrix dimnames.HDF5Matrix rownames.HDF5Matrix rownames<-.HDF5Matrix |
| Set dimension names on an HDF5Matrix | dimnames<-.HDF5Matrix |
| Spectral decomposition | eigen eigen.default eigen.HDF5Matrix |
| Remove high-missingness features from an HDF5Matrix | filter_low_coverage filter_low_coverage.HDF5Matrix |
| Remove SNPs by Minor Allele Frequency from an HDF5Matrix | filter_maf filter_maf.HDF5Matrix |
| Get available (free) system RAM | get_available_ram |
| Get number of CPU cores | get_cpu_cores |
| Get dynamic memory thresholds based on system RAM | get_memory_thresholds |
| Get recommended number of threads for parallel operations | get_recommended_threads |
| Get total system RAM | get_total_ram |
| Apply a mathematical operation to multiple HDF5 datasets | hdf5_apply |
| Close all HDF5Matrix objects | hdf5_close_all |
| Close all HDF5 handles for a specific file | hdf5_close_file |
| Create an HDF5 dataset and return an HDF5Matrix object | hdf5_create_matrix |
| Import data from file or URL into HDF5 format | hdf5_import |
| Import multiple files into HDF5 | hdf5_import_multiple |
| Open an HDF5 dataset as an HDF5Matrix object | hdf5_matrix |
| Reduce all datasets in an HDF5 group by a binary operation | hdf5_reduce |
| Set or get HDF5Matrix computation options | hdf5matrix_options |
| S3 methods for HDF5Matrix | HDF5Matrix-S3 |
| Summary statistics for HDF5Matrix | HDF5Matrix-scalar-aggregations mean.HDF5Matrix Summary.HDF5Matrix |
| Impute missing SNP values in an HDF5Matrix | impute_snps impute_snps.HDF5Matrix |
| Check if HDF5Matrix is open | is_open |
| Length of an HDF5Matrix | length.HDF5Matrix |
| List datasets in an HDF5 file or group | list_datasets |
| Print system memory information | memory_info |
| miRNA | miRNA |
| Sparse-aware matrix multiplication (generic) | multiply_sparse |
| Sparse-aware matrix multiplication for HDF5Matrix | multiply_sparse.HDF5Matrix |
| Get memory size of HDF5Matrix without loading | object_size |
| Elementwise arithmetic operators for HDF5Matrix objects | Ops.HDF5Matrix |
| Principal Component Analysis of an HDF5Matrix | prcomp.HDF5Matrix |
| Print an HDF5Matrix object | print.HDF5Matrix |
| Print method for HDF5PCA objects | print.HDF5PCA |
| Moore-Penrose pseudoinverse | pseudoinverse pseudoinverse.default pseudoinverse.HDF5Matrix |
| QR decomposition of an HDF5Matrix | qr |
| QR decomposition of an HDF5Matrix | qr.HDF5Matrix |
| Row-bind HDF5Matrix objects | rbind.HDF5Matrix |
| Reduce a group of HDF5 datasets by accumulation (generic) | reduce |
| Scale / normalize an HDF5Matrix | scale scale.HDF5Matrix |
| Standard deviation of all elements of an HDF5Matrix | sd sd.HDF5Matrix |
| Show current HDF5Matrix performance settings | show_hdf5matrix_options |
| Matrix inverse of a symmetric positive-definite HDF5Matrix via Cholesky | solve.HDF5Matrix |
| Split an HDF5Matrix into multiple block datasets | split_dataset split_dataset.HDF5Matrix |
| Split an HDF5Matrix into a list of blocks | split.HDF5Matrix |
| Structure of an HDF5Matrix object | str.HDF5Matrix |
| Singular Value Decomposition (generic) | svd |
| Singular Value Decomposition of an HDF5Matrix | svd.HDF5Matrix |
| Sweep out array summaries (generic) | sweep |
| Broadcast a vector over an HDF5Matrix (sweep) | sweep.HDF5Matrix |
| Get system information summary | system_info |
| Transposed cross product of HDF5Matrix objects | tcrossprod tcrossprod.HDF5Matrix |
| Variance of all elements of an HDF5Matrix | var var.HDF5Matrix |
